Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68263 | Canola | nucleus | 77.78 | 77.78 |
| CDY65232 | Canola | nucleus | 77.78 | 77.78 |
| Bra020817.1-P | Field mustard | nucleus | 77.78 | 77.78 |
| VIT_02s0025g00250.t01 | Wine grape | nucleus | 68.69 | 68.0 |
| CDY63421 | Canola | nucleus | 67.68 | 67.68 |
| KRH41229 | Soybean | nucleus | 55.56 | 63.22 |
| KRH59959 | Soybean | nucleus | 54.55 | 62.07 |
| KRH27899 | Soybean | nucleus | 57.58 | 57.58 |
| KRH77582 | Soybean | nucleus | 55.56 | 57.29 |
| GSMUA_Achr11P... | Banana | nucleus | 57.58 | 55.88 |
| PGSC0003DMT400032105 | Potato | nucleus | 54.55 | 51.43 |
| Solyc08g081470.2.1 | Tomato | nucleus | 54.55 | 51.43 |
| AT1G69230.1 | Thale cress | cytosol | 50.51 | 45.45 |
| AT1G26355.1 | Thale cress | plastid | 50.51 | 44.25 |
| AT2G03680.2 | Thale cress | plastid | 47.47 | 39.5 |
| AT5G15600.1 | Thale cress | plastid | 47.47 | 37.01 |
| AT3G02180.1 | Thale cress | cytosol | 44.44 | 36.07 |
Protein Annotations
| MapMan:20.1.5.1.3 | EntrezGene:828449 | UniProt:A0A178V3J3 | ProteinID:AEE84767.1 | EMBL:AL031326 | EMBL:AL161559 |
| ArrayExpress:AT4G23496 | EnsemblPlantsGene:AT4G23496 | RefSeq:AT4G23496 | TAIR:AT4G23496 | RefSeq:AT4G23496-TAIR-G | EnsemblPlants:AT4G23496.1 |
| TAIR:AT4G23496.1 | EMBL:AY084337 | EMBL:BT003955 | EMBL:BT005054 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008150 | RefSeq:NP_567685.1 | ProteinID:OAP00809.1 |
| PO:PO:0000230 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR33403 | PANTHER:PTHR33403:SF2 | UniProt:Q8LGD1 | Symbol:SP1L5 | UniParc:UPI000000C201 | SEG:seg |
Description
SP1L5Protein SPIRAL1-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD1]
Coordinates
chr4:-:12257513..12258670
Molecular Weight (calculated)
10371.9 Da
IEP (calculated)
7.518
GRAVY (calculated)
-0.898
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MSRGGSFGGG QSSLGYLFGS DNEIPKTPAP PVAPKPAPPY GVDSTEEDHE ADQKPKISNN NYQRVQGQNS GNFVTDRPTT KVKSVPGGGS SLGYLFGDK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.