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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 1
  • plastid 1
  • mitochondrion 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plastid
BaCelLo:endoplasmic reticulum, extracellular, golgi
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX91981 Canola nucleus 81.97 68.97
AT5G15600.1 Thale cress plastid 66.39 63.78
CDY34708 Canola cytosol, plastid 40.98 54.95
Bra001035.1-P Field mustard cytosol 81.97 49.26
CDX74269 Canola cytosol 81.97 49.26
AT1G69230.1 Thale cress cytosol 44.26 49.09
AT1G26355.1 Thale cress plastid 44.26 47.79
AT4G23496.1 Thale cress nucleus 36.07 44.44
AT2G03680.2 Thale cress plastid 42.62 43.7
Protein Annotations
MapMan:20.1.5.1.3EntrezGene:821277UniProt:A0A178VFA1ProteinID:AAF02119.1ProteinID:AAF14820.1ProteinID:AEE73773.1
ProteinID:AEE73774.1ArrayExpress:AT3G02180EnsemblPlantsGene:AT3G02180RefSeq:AT3G02180TAIR:AT3G02180RefSeq:AT3G02180-TAIR-G
EnsemblPlants:AT3G02180.1TAIR:AT3G02180.1EMBL:AY045878EMBL:AY086253EMBL:AY117217Unigene:At.19767
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005856GO:GO:0005874GO:GO:0008150
GO:GO:0009719GO:GO:0009735RefSeq:NP_566166.1RefSeq:NP_974209.1ProteinID:OAP04231.1PO:PO:0000005
PO:PO:0000013PO:PO:0000014PO:PO:0000035PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007131
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR33403PANTHER:PTHR33403:SF12UniProt:Q9S7P8
Symbol:SP1L3UniParc:UPI00000A196ASEG:seg:::
Description
SP1L3Protein SPIRAL1-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7P8]
Coordinates
chr3:+:404432..405656
Molecular Weight (calculated)
12172.9 Da
IEP (calculated)
10.013
GRAVY (calculated)
-0.627
Length
122 amino acids
Sequence
(BLAST)
001: MGKARGVNNG VNESSLGYLF GSGQPSSAAA ATMGTTTTTT TTTTTDGTGG RPITTTTTTV TDNKKTSAGV RGSPNNYFRS EGQNCGNFLT DRPSTKVHAA
101: PGGGSSLDYL FGGPSPAGSG NK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.