Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15600.1 | CDY00922 | AT3G10340.1 | 21798944 |
| AT5G15600.1 | CDY08611 | AT3G10340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023527.1-P | Field mustard | nucleus, plastid | 100.0 | 100.0 |
| CDX90984 | Canola | cytosol | 60.81 | 82.57 |
| CDY26443 | Canola | cytosol | 51.35 | 64.96 |
| CDX69512 | Canola | cytosol, plastid | 52.03 | 59.69 |
| AT5G15600.1 | Thale cress | plastid | 46.62 | 54.33 |
| CDX91981 | Canola | nucleus | 47.3 | 48.28 |
| CDY54148 | Canola | plastid | 35.81 | 47.75 |
| CDY34708 | Canola | cytosol, plastid | 28.38 | 46.15 |
| CDY68263 | Canola | nucleus | 30.41 | 45.45 |
| CDY65232 | Canola | nucleus | 30.41 | 45.45 |
| CDY50305 | Canola | plastid | 35.81 | 44.17 |
| CDY63421 | Canola | nucleus | 29.05 | 43.43 |
| CDY69243 | Canola | plastid | 31.08 | 42.2 |
| CDY45707 | Canola | plastid | 31.08 | 41.44 |
| CDY33112 | Canola | cytosol, mitochondrion | 31.08 | 40.35 |
| CDY51204 | Canola | plastid | 32.43 | 40.34 |
| CDY02981 | Canola | cytosol, mitochondrion | 29.05 | 38.39 |
| CDY04162 | Canola | cytosol | 31.08 | 38.02 |
| CDX74269 | Canola | cytosol | 48.65 | 35.47 |
Protein Annotations
| EnsemblPlants:CDX85544 | EnsemblPlantsGene:GSBRNA2T00143257001 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | ProteinID:CDX85544 | ProteinID:CDX85544.1 |
| SEG:seg | UniParc:UPI0002543658 | MapMan:20.1.5.1.3 | : | : | : |
Description
BnaA02g02690D
Coordinates
chrLK031842:-:557897..562265
Molecular Weight (calculated)
15599.4 Da
IEP (calculated)
10.890
GRAVY (calculated)
-0.881
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIAKRTLCS QTKRKANVGK RRGNKNQNTD LRVSAPELAR REMGKARGVN SGAGESSLGY LFGSVESVSK PNMPTTTTPT TTTGDKAKTE EADKKQMSAG
101: VRGSPNNYIR TEGQNCGNFL TERPSTKVHA APGGGSSLGY LFGSGSGK
101: VRGSPNNYIR TEGQNCGNFL TERPSTKVHA APGGGSSLGY LFGSGSGK
001: MGKARGVNSG GGESSLGYLF GSGESVPKPN KPNAKTGFTT TTTTTTTTDG AGGRPKTTTT TTTTGDKNKT EENSAGVRGS PNNYYRSDGQ NCGNFLTERP
101: STKVHAAPGG GSSLGYLFGS GPCGSDK
101: STKVHAAPGG GSSLGYLFGS GPCGSDK
Arabidopsis Description
SP1L4Protein SPIRAL1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF22]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.