Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15600.1 | CDY00922 | AT3G10340.1 | 21798944 |
| AT5G15600.1 | CDY08611 | AT3G10340.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26443 | Canola | cytosol | 75.23 | 70.09 |
| CDX69512 | Canola | cytosol, plastid | 74.31 | 62.79 |
| CDX85544 | Canola | nucleus, plastid | 82.57 | 60.81 |
| AT5G15600.1 | Thale cress | plastid | 66.06 | 56.69 |
| CDY54148 | Canola | plastid | 50.46 | 49.55 |
| CDX91981 | Canola | nucleus | 65.14 | 48.97 |
| CDY34708 | Canola | cytosol, plastid | 40.37 | 48.35 |
| CDY65232 | Canola | nucleus | 42.2 | 46.46 |
| CDY50305 | Canola | plastid | 50.46 | 45.83 |
| CDY68263 | Canola | nucleus | 41.28 | 45.45 |
| CDY45707 | Canola | plastid | 45.87 | 45.05 |
| CDY69243 | Canola | plastid | 44.95 | 44.95 |
| CDY33112 | Canola | cytosol, mitochondrion | 45.87 | 43.86 |
| CDY63421 | Canola | nucleus | 39.45 | 43.43 |
| CDY04162 | Canola | cytosol | 45.87 | 41.32 |
| CDY02981 | Canola | cytosol, mitochondrion | 42.2 | 41.07 |
| CDY51204 | Canola | plastid | 44.04 | 40.34 |
| CDX74269 | Canola | cytosol | 65.14 | 34.98 |
Protein Annotations
| EnsemblPlants:CDX90984 | EnsemblPlantsGene:GSBRNA2T00151740001 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | ProteinID:CDX90984 | ProteinID:CDX90984.1 |
| SEG:seg | UniParc:UPI0004EC813E | MapMan:20.1.5.1.3 | : | : | : |
Description
BnaC02g06130D
Coordinates
chrLK031865:-:105077..105921
Molecular Weight (calculated)
11108.9 Da
IEP (calculated)
10.109
GRAVY (calculated)
-0.772
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKARGVNSG AGESSLGYLF GSGESVSKPN MPTTATTTTP TTTTGDKAKT EEEKKKQMSA GVRGSPNNYI RTEGQNCGNF LTERPSTKVH AAPGGGSSLG
101: YLFGSGSGK
101: YLFGSGSGK
001: MGKARGVNSG GGESSLGYLF GSGESVPKPN KPNAKTGFTT TTTTTTTTDG AGGRPKTTTT TTTTGDKNKT EENSAGVRGS PNNYYRSDGQ NCGNFLTERP
101: STKVHAAPGG GSSLGYLFGS GPCGSDK
101: STKVHAAPGG GSSLGYLFGS GPCGSDK
Arabidopsis Description
SP1L4Protein SPIRAL1-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF22]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.