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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 4
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY02981 Canola cytosol, mitochondrion 80.67 85.71
Bra017377.1-P Field mustard cytosol 82.35 80.99
Bra026545.1-P Field mustard plastid 71.43 77.98
AT2G03680.2 Thale cress plastid 68.91 68.91
Os12t0502000-01 Rice cytosol, mitochondrion, nucleus, plastid 53.78 63.37
KXG23503 Sorghum nucleus 51.26 61.0
Zm00001d048795_P001 Maize mitochondrion 53.78 56.64
Os11t0629400-01 Rice extracellular 52.94 54.78
Bra038321.1-P Field mustard plastid 49.58 53.15
EES10151 Sorghum mitochondrion 50.42 49.59
Bra020817.1-P Field mustard nucleus 36.97 44.44
Bra008685.1-P Field mustard cytosol, plastid 44.54 41.09
Bra023527.1-P Field mustard nucleus, plastid 38.66 31.08
Zm00001d023735_P001 Maize cytosol, plasma membrane, plastid 36.97 27.33
Bra001035.1-P Field mustard cytosol 42.02 24.63
Protein Annotations
EnsemblPlants:Bra025124.1EnsemblPlants:Bra025124.1-PEnsemblPlantsGene:Bra025124PANTHER:PTHR33403PANTHER:PTHR33403:SF11SEG:seg
UniParc:UPI000253F7FEUniProt:M4E8L8MapMan:20.1.5.1.3:::
Description
AT2G03680 (E=3e-034) SPR1, SKU6 | SPR1 (SPIRAL1)
Coordinates
chrA06:-:23331148..23331591
Molecular Weight (calculated)
11750.7 Da
IEP (calculated)
9.634
GRAVY (calculated)
-0.479
Length
119 amino acids
Sequence
(BLAST)
001: MGRGNSCGGG QSSLNYLFGG GDAPPPPPKP APAPPAEPAN RTAAPAPAPA AVSATAATTT VEPAKINKEI PAGIKTPVNN YARAEGQNTG NFITDRPSTK
101: VHAAPGGGSS LDYLFTGGK
Best Arabidopsis Sequence Match ( AT2G03680.3 )
(BLAST)
001: MGRGNSCGGG QSSLDYLFGG DAPAPKPVPA PRPAPTESNN GPAPPVTAVT ATALTTATTS VEPAELNKQI PAGIKTPVNN YARAEGQNTG NFLTDRPSTK
101: VHAAPGGGSS LDYLFTGGK
Arabidopsis Description
SPR1Protein SPIRAL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.