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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 2
  • nucleus 3
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY54148 Canola plastid 92.79 92.79
CDY50305 Canola plastid 93.69 86.67
AT1G69230.1 Thale cress cytosol 69.37 70.0
Solyc01g010270.2.1 Tomato nucleus 57.66 61.54
PGSC0003DMT400056345 Potato nucleus 57.66 59.26
PGSC0003DMT400063325 Potato cytosol 58.56 58.56
Solyc03g114970.2.1 Tomato nucleus 58.56 58.56
Bra026545.1-P Field mustard plastid 56.76 57.8
PGSC0003DMT400072909 Potato cytosol 56.76 56.25
Solyc05g012160.2.1 Tomato cytosol 56.76 56.25
Bra020817.1-P Field mustard nucleus 49.55 55.56
KRH70932 Soybean cytosol, mitochondrion, nucleus, plastid 52.25 53.7
Bra017377.1-P Field mustard cytosol 54.05 49.59
Bra025124.1-P Field mustard plastid 53.15 49.58
KRH75073 Soybean cytosol, mitochondrion, nucleus, plastid 52.25 45.31
Bra008685.1-P Field mustard cytosol, plastid 52.25 44.96
Bra023527.1-P Field mustard nucleus, plastid 47.75 35.81
VIT_17s0000g05160.t01 Wine grape cytosol 49.55 28.5
Bra001035.1-P Field mustard cytosol 51.35 28.08
Protein Annotations
EnsemblPlants:Bra038321.1EnsemblPlants:Bra038321.1-PEnsemblPlantsGene:Bra038321PANTHER:PTHR33403PANTHER:PTHR33403:SF11SEG:seg
UniParc:UPI0002546696UniProt:M4FB55MapMan:20.1.5.1.3:::
Description
AT1G26355 (E=7e-040) SP1L1 | SP1L1 (SPIRAL1-LIKE1)
Coordinates
chrA02:-:11291876..11292458
Molecular Weight (calculated)
11021.6 Da
IEP (calculated)
10.005
GRAVY (calculated)
-0.650
Length
111 amino acids
Sequence
(BLAST)
001: MGRGVSAGGG QSSLGYLFGS GEAPKPAVNS ASAETQPPPP STTQPKTVAP KPVDITKQGP AGLNSNSANN YMRADGQNSG NFLTDRPSTK VHSAPGGGSS
101: LNYLFGGGSS N
Best Arabidopsis Sequence Match ( AT1G26355.1 )
(BLAST)
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.