Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063325 | Potato | cytosol | 97.3 | 97.3 |
| Solyc01g010270.2.1 | Tomato | nucleus | 57.66 | 61.54 |
| AT1G69230.1 | Thale cress | cytosol | 60.36 | 60.91 |
| KXG23503 | Sorghum | nucleus | 53.15 | 59.0 |
| Bra038321.1-P | Field mustard | plastid | 58.56 | 58.56 |
| CDY54148 | Canola | plastid | 58.56 | 58.56 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 52.25 | 57.43 |
| Solyc05g012160.2.1 | Tomato | cytosol | 57.66 | 57.14 |
| CDY50305 | Canola | plastid | 58.56 | 54.17 |
| Os11t0629400-01 | Rice | extracellular | 55.86 | 53.91 |
| EES10151 | Sorghum | mitochondrion | 56.76 | 52.07 |
| KRH70932 | Soybean | cytosol, mitochondrion, nucleus, plastid | 50.45 | 51.85 |
| Zm00001d048795_P001 | Maize | mitochondrion | 52.25 | 51.33 |
| KRH75073 | Soybean | cytosol, mitochondrion, nucleus, plastid | 51.35 | 44.53 |
| Solyc08g081470.2.1 | Tomato | nucleus | 37.84 | 40.0 |
| VIT_17s0000g05160.t01 | Wine grape | cytosol | 52.25 | 30.05 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 39.64 | 27.33 |
Protein Annotations
| EnsemblPlants:Solyc03g114970.2.1 | EnsemblPlantsGene:Solyc03g114970.2 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF11 | SEG:seg | UniParc:UPI00027685AF |
| UniProt:K4BKZ9 | MapMan:20.1.5.1.3 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:64833280..64834554
Molecular Weight (calculated)
11344.0 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.931
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGVSSGGG QSSLGYLFGD GEPPKPTNNK VEAPQNQGPT TSDPQKPTAT APAPNVNKQI PAGIQGRNSN NYFRADGQNT GNFLTDRPST KVHAAPGGGS
101: SLGYLFGDGK N
101: SLGYLFGDGK N
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.