Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g114970.2.1 | Tomato | nucleus | 30.05 | 52.25 |
| PGSC0003DMT400063325 | Potato | cytosol | 29.53 | 51.35 |
| VIT_16s0098g00560.t01 | Wine grape | plastid | 30.05 | 50.0 |
| Solyc01g010270.2.1 | Tomato | nucleus | 26.94 | 50.0 |
| Bra038321.1-P | Field mustard | plastid | 28.5 | 49.55 |
| VIT_01s0137g00650.t01 | Wine grape | plastid | 28.5 | 48.67 |
| PGSC0003DMT400056345 | Potato | nucleus | 26.94 | 48.15 |
| KXG23503 | Sorghum | nucleus | 24.87 | 48.0 |
| CDY54148 | Canola | plastid | 27.46 | 47.75 |
| Zm00001d048795_P001 | Maize | mitochondrion | 27.46 | 46.9 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 24.35 | 46.53 |
| PGSC0003DMT400072909 | Potato | cytosol | 26.94 | 46.43 |
| Solyc05g012160.2.1 | Tomato | cytosol | 26.94 | 46.43 |
| AT1G69230.1 | Thale cress | cytosol | 26.42 | 46.36 |
| VIT_14s0068g00230.t01 | Wine grape | cytosol | 27.98 | 46.15 |
| EES10151 | Sorghum | mitochondrion | 27.98 | 44.63 |
| KRH70932 | Soybean | cytosol, mitochondrion, nucleus, plastid | 24.87 | 44.44 |
| Os11t0629400-01 | Rice | extracellular | 26.42 | 44.35 |
| VIT_01s0011g00370.t01 | Wine grape | plastid | 30.05 | 44.27 |
| CDY50305 | Canola | plastid | 27.46 | 44.17 |
| VIT_02s0025g00250.t01 | Wine grape | nucleus | 20.73 | 40.0 |
| KRH75073 | Soybean | cytosol, mitochondrion, nucleus, plastid | 25.91 | 39.06 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 22.28 | 26.71 |
Protein Annotations
| ArrayExpress:VIT_17s0000g05160 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g05160.t01 | EnsemblPlantsGene:VIT_17s0000g05160 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF11 |
| ProteinID:CCB43146 | ProteinID:CCB43146.1 | SEG:seg | UniParc:UPI000210A5E0 | UniProt:F6GTD7 | MapMan:20.1.5.1.3 |
Description
No Description!
Coordinates
chr17:-:5652214..5657534
Molecular Weight (calculated)
20558.5 Da
IEP (calculated)
10.111
GRAVY (calculated)
-0.178
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAFSCQDIG EVSRIFSWFL VKERFKLEIM GRGVSSGGGQ SSLGYLFGSG EAPKPATNNA EAPQNQGQVG SSGPSQMSTA VAPPAVAPPA VAPPAGAPPA
101: VINKQIPAGV QGNTTNNYFR ADGQNTGNFI TETFAPYMHL APFKLYPQIS QLILTGSAFN KGPCGAWRWV FPRLPVWGWQ QLRPPGFNSS LFA
101: VINKQIPAGV QGNTTNNYFR ADGQNTGNFI TETFAPYMHL APFKLYPQIS QLILTGSAFN KGPCGAWRWV FPRLPVWGWQ QLRPPGFNSS LFA
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.