Factsheet for VIT_01s0137g00650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0098g00560.t01	Wine grape	plastid	67.26	65.52
VIT_14s0068g00230.t01	Wine grape	cytosol	63.72	61.54
VIT_01s0011g00370.t01	Wine grape	plastid	67.26	58.02
Os12t0502000-01	Rice	cytosol, mitochondrion, nucleus, plastid	50.44	56.44
KXG23503	Sorghum	nucleus	49.56	56.0
Zm00001d048795_P001	Maize	mitochondrion	53.1	53.1
Os11t0629400-01	Rice	extracellular	52.21	51.3
EES10151	Sorghum	mitochondrion	53.98	50.41
VIT_02s0025g00250.t01	Wine grape	nucleus	40.71	46.0
VIT_17s0000g05160.t01	Wine grape	cytosol	48.67	28.5
Zm00001d023735_P001	Maize	cytosol, plasma membrane, plastid	38.05	26.71

Protein Annotations

EntrezGene:100252679	wikigene:100252679	MapMan:20.1.5.1.3	EMBL:AM446772	ProteinID:CAN69704	ProteinID:CAN69704.1
ProteinID:CBI16802	ProteinID:CBI16802.3	UniProt:D7SMC3	EMBL:FN594954	EntrezGene:LOC100252679	wikigene:LOC100252679
PANTHER:PTHR33403	PANTHER:PTHR33403:SF11	TIGR:TC65695	UniParc:UPI0001982B89	ArrayExpress:VIT_01s0137g00650	EnsemblPlantsGene:VIT_01s0137g00650
EnsemblPlants:VIT_01s0137g00650.t01	unigene:Vvi.2001	RefSeq:XP_002285501	RefSeq:XP_002285501.1	RefSeq:XP_010650586.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:7171473..7178513

Molecular Weight (calculated)

11206.8 Da

IEP (calculated)

9.734

GRAVY (calculated)

-0.548

Length

113 amino acids

Sequence
(BLAST)

001: MGRGVSSGGG QSSLSYLFGS GEAPRPVSNN APAPPIEGHA ANNGPSSRPT AAAQPIDVTK QVPAGIHGNT TNNYFRADGQ NTGNFITDRP STKVHAAPGG
101: GSSLGYLFGG GGN

Best Arabidopsis Sequence Match ( AT1G26355.1 )
(BLAST)

001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN

Arabidopsis Description

SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.