Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P27400_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 61.54 | 72.0 |
| GSMUA_Achr9P07060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 60.68 | 71.0 |
| GSMUA_Achr1P27180_001 | Banana | cytosol, nucleus, plastid | 58.97 | 69.7 |
| PGSC0003DMT400003457 | Potato | nucleus | 64.1 | 68.18 |
| KXG23503 | Sorghum | nucleus | 58.12 | 68.0 |
| GSMUA_Achr5P08910_001 | Banana | cytosol | 56.41 | 67.35 |
| GSMUA_Achr1P13590_001 | Banana | nucleus | 57.27 | 67.0 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 55.56 | 64.36 |
| VIT_16s0098g00560.t01 | Wine grape | plastid | 63.25 | 63.79 |
| VIT_01s0137g00650.t01 | Wine grape | plastid | 61.54 | 63.72 |
| VIT_01s0011g00370.t01 | Wine grape | plastid | 68.38 | 61.07 |
| Os11t0629400-01 | Rice | extracellular | 55.56 | 56.52 |
| Zm00001d048795_P001 | Maize | mitochondrion | 52.99 | 54.87 |
| EES10151 | Sorghum | mitochondrion | 55.56 | 53.72 |
| VIT_02s0025g00250.t01 | Wine grape | nucleus | 43.59 | 51.0 |
| KRH18375 | Soybean | endoplasmic reticulum | 56.41 | 48.53 |
| KRG93666 | Soybean | extracellular | 57.27 | 42.95 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 41.03 | 29.81 |
| VIT_17s0000g05160.t01 | Wine grape | cytosol | 46.15 | 27.98 |
Protein Annotations
| ArrayExpress:VIT_14s0068g00230 | EMBL:FN595232 | EnsemblPlants:VIT_14s0068g00230.t01 | EnsemblPlantsGene:VIT_14s0068g00230 | EntrezGene:100256565 | EntrezGene:LOC100256565 |
| PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | ProteinID:CBI21204 | ProteinID:CBI21204.3 | RefSeq:XP_002280218 | RefSeq:XP_002280218.1 |
| SEG:seg | UniParc:UPI00015C8CF7 | UniProt:D7SVA5 | wikigene:100256565 | wikigene:LOC100256565 | MapMan:20.1.5.1.3 |
Description
No Description!
Coordinates
chr14:-:23946758..23949751
Molecular Weight (calculated)
11606.3 Da
IEP (calculated)
9.661
GRAVY (calculated)
-0.670
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGVSSGGG QSSLGYLFGS GETPNKAKVA QNQGPIANNE PPQRPPAPSQ PVDNSKLIPA GINSNVSNNY FRADGQNCGN FITDRPSTKV HAAPGGGSSL
101: DYLFGGGGSG GGSGGSK
101: DYLFGGGGSG GGSGGSK
001: MGRGVSAGGG QSSLGYLFGS GEAPKLAAVN KTPAETESSA HAPPTQAAAA NAVDSIKQVP AGLNSNSANN YMRAEGQNTG NFITDRPSTK VHSAPGGGSS
101: LDYLFGGGSN
101: LDYLFGGGSN
Arabidopsis Description
SP1L2Protein SPIRAL1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.