Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P08910_001 | Banana | cytosol | 84.85 | 85.71 |
| GSMUA_Achr9P07060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 76.77 | 76.0 |
| GSMUA_Achr1P13590_001 | Banana | nucleus | 75.76 | 75.0 |
| GSMUA_Achr6P27400_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 74.75 | 74.0 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 72.73 | 71.29 |
| KXG23503 | Sorghum | nucleus | 68.69 | 68.0 |
| Os11t0629400-01 | Rice | extracellular | 69.7 | 60.0 |
| VIT_14s0068g00230.t01 | Wine grape | cytosol | 69.7 | 58.97 |
| Zm00001d048795_P001 | Maize | mitochondrion | 64.65 | 56.64 |
| PGSC0003DMT400003457 | Potato | nucleus | 62.63 | 56.36 |
| EES10151 | Sorghum | mitochondrion | 63.64 | 52.07 |
| KRH18375 | Soybean | endoplasmic reticulum | 66.67 | 48.53 |
| GSMUA_Achr11P... | Banana | nucleus | 43.43 | 42.16 |
| KRG93666 | Soybean | extracellular | 65.66 | 41.67 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 51.52 | 31.68 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P27180_001 | EnsemblPlants:GSMUA_Achr1T27180_001 | EnsemblPlantsGene:GSMUA_Achr1G27180_001 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | SEG:seg |
| UniParc:UPI000295E308 | UniProt:M0S3H5 | MapMan:20.1.5.1.3 | : | : | : |
Description
Putative Mediator of RNA polymerase II transcription subunit 14 [Source:GMGC_GENE;Acc:GSMUA_Achr1G27180_001]
Coordinates
chr1:-:23797548..23801477
Molecular Weight (calculated)
9803.3 Da
IEP (calculated)
8.734
GRAVY (calculated)
-0.565
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRGVSSGGG QSSLGYLFGG GEAPKSASDD AAPVQKPAPP PPPINKEIPA GIQSSQAKNC YRADGQNCGN FITDRPSTKV HAAPGGGSSL GYLFGNGGN
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.