Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- mitochondrion 4
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P27400_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 52.21 | 71.0 |
| GSMUA_Achr9P07060_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 51.47 | 70.0 |
| GSMUA_Achr5P08910_001 | Banana | cytosol | 48.53 | 67.35 |
| GSMUA_Achr1P13590_001 | Banana | nucleus | 49.26 | 67.0 |
| GSMUA_Achr1P27180_001 | Banana | cytosol, nucleus, plastid | 48.53 | 66.67 |
| KRG93666 | Soybean | extracellular | 75.74 | 66.03 |
| KXG23503 | Sorghum | nucleus | 47.79 | 65.0 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 47.79 | 64.36 |
| Os11t0629400-01 | Rice | extracellular | 51.47 | 60.87 |
| KRH70932 | Soybean | cytosol, mitochondrion, nucleus, plastid | 47.79 | 60.19 |
| Zm00001d048795_P001 | Maize | mitochondrion | 50.0 | 60.18 |
| PGSC0003DMT400003457 | Potato | nucleus | 48.53 | 60.0 |
| EES10151 | Sorghum | mitochondrion | 51.47 | 57.85 |
| VIT_14s0068g00230.t01 | Wine grape | cytosol | 48.53 | 56.41 |
| KRH75073 | Soybean | cytosol, mitochondrion, nucleus, plastid | 47.79 | 50.78 |
| KRH59959 | Soybean | nucleus | 31.62 | 49.43 |
| KRH77582 | Soybean | nucleus | 33.82 | 47.92 |
| KRH41229 | Soybean | nucleus | 29.41 | 45.98 |
| KRH27899 | Soybean | nucleus | 33.09 | 45.45 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 34.56 | 29.19 |
Protein Annotations
| EMBL:ACUP02008065 | EnsemblPlants:KRH18375 | EnsemblPlantsGene:GLYMA_13G055400 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | ProteinID:KRH18375 |
| ProteinID:KRH18375.1 | SEG:seg | UniParc:UPI00023D11E8 | UniProt:I1LWT2 | MapMan:20.1.5.1.3 | : |
Description
hypothetical protein
Coordinates
chr13:-:15248277..15250317
Molecular Weight (calculated)
13557.8 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.475
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCCYIGLAT PNRREMGRGV SAGGGQSSLG YLFGSGVPAS SANSQPANGA RTQNASAPSP PVDKQSPAPA PAPAPASSPI DKQIPAGIPG SLKNNYHRAD
101: GQNCGNFLTD RPSTKVHAAP GGGSSLNYLF GGPPGN
101: GQNCGNFLTD RPSTKVHAAP GGGSSLNYLF GGPPGN
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.