Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056345 | Potato | nucleus | 82.69 | 79.63 |
| Solyc05g012160.2.1 | Tomato | cytosol | 69.23 | 64.29 |
| KXG23503 | Sorghum | nucleus | 61.54 | 64.0 |
| Os12t0502000-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 61.54 | 63.37 |
| KRH70932 | Soybean | cytosol, mitochondrion, nucleus, plastid | 65.38 | 62.96 |
| AT1G69230.1 | Thale cress | cytosol | 61.54 | 58.18 |
| Bra038321.1-P | Field mustard | plastid | 61.54 | 57.66 |
| CDY54148 | Canola | plastid | 61.54 | 57.66 |
| Solyc03g114970.2.1 | Tomato | nucleus | 61.54 | 57.66 |
| Zm00001d048795_P001 | Maize | mitochondrion | 60.58 | 55.75 |
| CDY50305 | Canola | plastid | 61.54 | 53.33 |
| Os11t0629400-01 | Rice | extracellular | 58.65 | 53.04 |
| KRH75073 | Soybean | cytosol, mitochondrion, nucleus, plastid | 61.54 | 50.0 |
| EES10151 | Sorghum | mitochondrion | 56.73 | 48.76 |
| Solyc08g081470.2.1 | Tomato | nucleus | 44.23 | 43.81 |
| Zm00001d023735_P001 | Maize | cytosol, plasma membrane, plastid | 44.23 | 28.57 |
| VIT_17s0000g05160.t01 | Wine grape | cytosol | 50.0 | 26.94 |
Protein Annotations
| EnsemblPlants:Solyc01g010270.2.1 | EnsemblPlantsGene:Solyc01g010270.2 | PANTHER:PTHR33403 | PANTHER:PTHR33403:SF12 | SEG:seg | UniParc:UPI0002761AEA |
| UniProt:K4ATM2 | MapMan:20.1.5.1.3 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:5062742..5065710
Molecular Weight (calculated)
10271.8 Da
IEP (calculated)
7.534
GRAVY (calculated)
-0.498
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGVSSGGG QSSLGYLFGD GEAPTSTKTN PQAVQSEAQP INKEPVAAPS PPADATKQIP AGIQSIRADG QNTGNFITDR PSTKVHAAPG GGSSLGYLFG
101: GGSS
101: GGSS
001: MGRGVSVGGG QSSLGYLFGS GEAPKPAINN APAPSSETLP ISADPSPKHV AAQTVNVTKQ IPAGINKSST NNYIRADGQN TGNFLTDRPS TKVHAAPGGG
101: SSLDYLFGGG GSN
101: SSLDYLFGGG GSN
Arabidopsis Description
SP1L1Protein SPIRAL1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:B3H4F1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.