Factsheet for TraesCS3B01G428000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G396000.1	Wheat	nucleus	93.82	90.71
TraesCS3D01G390000.1	Wheat	nucleus	94.97	90.61
HORVU3Hr1G089250.3	Barley	nucleus	93.14	88.1
Zm00001d016924_P001	Maize	nucleus	63.62	64.8
Zm00001d050861_P001	Maize	nucleus	64.99	64.4
EES05301	Sorghum	nucleus	67.96	62.13
TraesCS6B01G376700.1	Wheat	nucleus	63.39	60.48
GSMUA_Achr10P...	Banana	nucleus	42.56	55.19
TraesCS2B01G340200.1	Wheat	nucleus	53.78	50.43
CDX81161	Canola	nucleus	17.16	39.06
KRH31276	Soybean	nucleus	33.87	37.19
Bra028601.1-P	Field mustard	nucleus	36.16	34.73
CDX85778	Canola	nucleus	36.16	34.73
CDY40078	Canola	nucleus	35.93	34.66
Solyc03g096630.1.1	Tomato	nucleus	33.87	34.1
KRG97597	Soybean	nucleus	35.93	33.84
KRH43217	Soybean	nucleus	34.78	33.55
PGSC0003DMT400053147	Potato	nucleus	34.1	32.96
KRH59382	Soybean	nucleus	34.78	32.9
AT5G10120.1	Thale cress	nucleus	34.78	32.27
VIT_00s0357g00120.t01	Wine grape	nucleus	34.55	31.2
Solyc04g054840.1.1	Tomato	nucleus	32.49	28.23
AT5G65100.1	Thale cress	nucleus	34.32	26.93
CDX78369	Canola	nucleus	19.22	25.53
Bra006050.1-P	Field mustard	nucleus	19.22	25.53
TraesCS4B01G175100.1	Wheat	nucleus	37.76	25.38
TraesCS2B01G116900.1	Wheat	nucleus	35.7	25.2
TraesCS7B01G145400.1	Wheat	nucleus	33.41	23.82
TraesCS5B01G265400.1	Wheat	nucleus	29.98	22.51
PGSC0003DMT400043160	Potato	nucleus	14.19	22.3
Bra024354.1-P	Field mustard	nucleus	15.79	19.44
CDY08821	Canola	nucleus	15.33	18.87
CDY14539	Canola	nucleus	16.02	18.82

Protein Annotations

Gene3D:1.10.3180.10	MapMan:11.5.2.4	MapMan:15.5.11	ncoils:Coil	InterPro:Ethylene_insens-like_DNA-bd	GO:GO:0003674
GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR023278	PFAM:PF04873
PANTHER:PTHR33305	PANTHER:PTHR33305:SF7	SUPFAM:SSF116768	EnsemblPlantsGene:TraesCS3B01G428000	EnsemblPlants:TraesCS3B01G428000.1	SEG:seg

Description

No Description!

Coordinates

chr3B:-:666790524..666791837

Molecular Weight (calculated)

48466.3 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.720

Length

437 amino acids

Sequence
(BLAST)

001: MEHGDGPGGP DPGGQQREEE ISDSESGSES LEISDLKKRM WKDQMLLTRL EGRTGAKGVA PAPAAGASSS SSSGQEEPPD VRCRRKAMLR AQDGVLRHML
101: RMMEACNARG FVYGVIDEAG EPMSGSSDSL RGWWKENVSF DRAGPMGLAG PMGESPIALA SSLHRLQDIQ DSTLGSVLSA LIQHCEPPQR SFPLERGLAP
201: PWWPTGHEPW WGTQGEMQAH QGVPPYRKPH DLKKAWKISL LSAVIKHMSP RFDQMRKLVW QSKRLQQKMS AKESETWSKV LRQEEALSSR LKSSLRITPF
301: DQEEEEEEEE EVKKKKVGKE RDDDGLESVV RGAQDKRKRE ISRTGSSGGS GSELTIMPPD QLAAAITEES RSPIDELMKL YYGCMQGVES YGDREKDDLT
401: PMHSVVLGNI DEVAQDVLFD IIGSCPEIDD VLRLMGE

Best Arabidopsis Sequence Match ( AT1G73730.2 )
(BLAST)

001: MENEPDDLAS DNVAEIDVSD EEIDADDLER RMWKDRVRLK RIKERQKAGS QGAQTKETPK KISDQAQRKK MSRAQDGILK YMLKLMEVCK VRGFVYGIIP
101: EKGKPVSGSS DNIRAWWKEK VKFDKNGPAA IAKYEEECLA FGKSDGNRNS QFVLQDLQDA TLGSLLSSLM QHCDPPQRKY PLEKGTPPPW WPTGNEEWWV
201: KLGLPKSQSP PYRKPHDLKK MWKVGVLTAV INHMLPDIAK IKRHVRQSKC LQDKMTAKES AIWLAVLNQE ESLIQQPSSD NGNSNVTETH RRGNNADRRK
301: PVVNSDSDYD VDGTEEASGS VSSKDSRRNQ IQKEQPTAIS HSVRDQDKAE KHRRRKRPRI RSGTVNRQEE EQPEAQQRNI LPDMNHVDAP LLEYNINGTH
401: QEDDVVDPNI ALGPEDNGLE LVVPEFNNNY TYLPLVNEQT MMPVDERPML YGPNPNQELQ FGSGYNFYNP SAVFVHNQED DILHTQIEMN TQAPPHNSGF
501: EEAPGGVLQP LGLLGNEDGV TGSELPQYQS GILSPLTDLD FDYGGFGDDF SWFGA

Arabidopsis Description

EIL3SLIM1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.