Factsheet for Bra039344.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43399	Canola	nucleus	100.0	100.0
Bra001472.1-P	Field mustard	nucleus	82.28	83.69
AT3G12820.1	Thale cress	nucleus	75.11	74.48
PGSC0003DMT400089342	Potato	nucleus	49.79	48.96
PGSC0003DMT400029235	Potato	nucleus	42.19	41.84
Solyc10g005550.1.1	Tomato	nucleus	41.77	40.74
Bra030812.1-P	Field mustard	nucleus	48.95	38.8
Bra035097.1-P	Field mustard	nucleus	41.77	36.67
Bra003619.1-P	Field mustard	nucleus	40.51	35.96
Bra026720.1-P	Field mustard	nucleus	42.19	35.84
Bra015481.1-P	Field mustard	nucleus	37.55	35.32
Bra021708.1-P	Field mustard	nucleus	35.02	33.2
Bra018267.1-P	Field mustard	nucleus	35.02	32.81
Bra026048.1-P	Field mustard	nucleus	38.82	32.51
Bra001907.1-P	Field mustard	nucleus	38.82	32.17
Bra022831.1-P	Field mustard	nucleus	33.33	32.11
Bra023742.1-P	Field mustard	nucleus	37.97	32.03
Bra014929.1-P	Field mustard	nucleus	38.4	31.93
KRH13720	Soybean	nucleus	43.88	30.14
KRH43737	Soybean	nucleus	47.68	29.27
VIT_19s0085g00050.t01	Wine grape	nucleus	42.19	27.47

Protein Annotations

EnsemblPlants:Bra039344.1	EnsemblPlants:Bra039344.1-P	EnsemblPlantsGene:Bra039344	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF883	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253E85A	UniProt:M4FE23	MapMan:15.5.2.1	:	:

Description

AT3G12820 (E=2e-082) AtMYB10 | AtMYB10 (myb domain protein 10); DNA binding / transcription factor

Coordinates

chrScaffold000164:-:17593..19159

Molecular Weight (calculated)

26912.6 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.816

Length

237 amino acids

Sequence
(BLAST)

001: MGKGKAPCCD HSQVLKRGPW SDEESEILKA FILQNGHRNW RSIPKLAGLM RCGKSCRLRW VNYLRPGLKR GNFTKEEEDT IIHLHQTLGN KWSKIASHLG
101: RTDNEIKNVW NTHLKKRSMK SNSSASSDVT NQAPSVSRSS SSSSSSSVSN NVIKSEKLNQ EEELEEILVE DMACGFEVNA PQSLESLFED RKVPPPITKP
201: DSLEIRGKSD DELCRQMVEP GLDDYNEWLN YFDNQTF

Best Arabidopsis Sequence Match ( AT3G12820.1 )
(BLAST)

001: MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC

Arabidopsis Description

AtMYB10Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.