Factsheet for Bra001472.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73800	Canola	nucleus	45.49	89.08
Bra039344.1-P	Field mustard	nucleus	83.69	82.28
AT3G12820.1	Thale cress	nucleus	75.11	73.22
PGSC0003DMT400089342	Potato	nucleus	51.07	49.38
PGSC0003DMT400029235	Potato	nucleus	44.21	43.1
Solyc10g005550.1.1	Tomato	nucleus	43.78	41.98
Bra030812.1-P	Field mustard	nucleus	49.79	38.8
Bra026720.1-P	Field mustard	nucleus	44.21	36.92
Bra035097.1-P	Field mustard	nucleus	42.06	36.3
Bra015481.1-P	Field mustard	nucleus	38.63	35.71
Bra003619.1-P	Field mustard	nucleus	40.34	35.21
Bra026048.1-P	Field mustard	nucleus	40.34	33.22
Bra018267.1-P	Field mustard	nucleus	36.05	33.2
Bra021708.1-P	Field mustard	nucleus	35.62	33.2
Bra022831.1-P	Field mustard	nucleus	34.33	32.52
Bra001907.1-P	Field mustard	nucleus	38.63	31.47
Bra014929.1-P	Field mustard	nucleus	38.2	31.23
Bra023742.1-P	Field mustard	nucleus	36.91	30.61
KRH13720	Soybean	nucleus	44.21	29.86
KRH43737	Soybean	nucleus	47.64	28.76
VIT_19s0085g00050.t01	Wine grape	nucleus	42.92	27.47

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra001472	EnsemblPlants:Bra001472.1	EnsemblPlants:Bra001472.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:M4CB92	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF883
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000254080C	SEG:seg	:

Description

AT3G12820 (E=9e-090) AtMYB10 | AtMYB10 (myb domain protein 10); DNA binding / transcription factor

Coordinates

chrA03:-:16515345..16516804

Molecular Weight (calculated)

26698.4 Da

IEP (calculated)

7.328

GRAVY (calculated)

-0.753

Length

233 amino acids

Sequence
(BLAST)

001: MGKRRTPCCD NSQVLKRGPW SDEESERLKA FILKHGHHNW RSLPKLAGLT RCGKSCRLRW LNYLRPGLKR GSFTKEEEDT IIHLHQVLGN KWSKIASHLP
101: GRTDNEIKNV WNTHLKKRSM KSNSSASDVT NQASSVSSSS SSVSNDVINS EKHNQEEELE NILVEHMACG FEVNAPQSLE FLFEDRQISP IPISKPESLE
201: IHMQSHDELC SRMVEPGLDV YNEWLSYFDN QTL

Best Arabidopsis Sequence Match ( AT3G12820.1 )
(BLAST)

001: MGNRRAPCCD KSQVKRGPWS DEESERLRSF ILKNGHQNWR SLPKLAGLMR CGKSCRLRWI NYLRPGLKRG NFTKEEEDTI IHLHQAYGNK WSKIASNFPG
101: RTDNEIKNVW NTHLKKRLVK RSISSSSSDV TNHSVSSTSS SSSSISSVLQ DVIIKSERPN QEEEFGEILV EQMACGFEVD APQSLECLFD DSQVPPPISK
201: PDSLQTHGKS SDHEFWSRLI EPGFDDYNEW LIFLDNQTC

Arabidopsis Description

AtMYB10Transcription factor MYB10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.