Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G261900.1 | Wheat | nucleus, plastid | 89.25 | 94.98 |
| TraesCS4A01G041000.2 | Wheat | nucleus, plastid | 88.66 | 94.8 |
| TraesCS4D01G261900.1 | Wheat | nucleus, plastid | 88.95 | 93.93 |
| Os03t0198300-02 | Rice | nucleus | 60.97 | 68.2 |
| EER95331 | Sorghum | nucleus, plastid | 55.67 | 64.18 |
| Zm00001d048175_P002 | Maize | nucleus | 55.23 | 62.92 |
| GSMUA_Achr7P25970_001 | Banana | nucleus | 36.52 | 35.89 |
| KRH61195 | Soybean | nucleus | 25.77 | 27.65 |
| CDX73142 | Canola | nucleus | 22.09 | 25.34 |
| CDY45410 | Canola | nucleus | 22.09 | 25.25 |
| VIT_18s0001g12100.t01 | Wine grape | nucleus | 27.98 | 24.8 |
| Bra015866.1-P | Field mustard | nucleus | 22.98 | 24.45 |
| KRH51877 | Soybean | nucleus | 25.63 | 24.17 |
| AT1G75100.1 | Thale cress | nucleus | 22.83 | 23.81 |
| PGSC0003DMT400071608 | Potato | nucleus | 24.45 | 23.78 |
| Solyc04g080040.2.1 | Tomato | nucleus | 24.3 | 22.79 |
| PGSC0003DMT400071606 | Potato | nucleus | 14.14 | 17.05 |
| CDY59467 | Canola | mitochondrion | 20.77 | 14.26 |
| HORVU5Hr1G024350.1 | Barley | plasma membrane | 12.52 | 11.52 |
| HORVU4Hr1G033280.4 | Barley | nucleus | 14.58 | 10.63 |
| HORVU1Hr1G091570.1 | Barley | nucleus | 15.61 | 7.05 |
| HORVU3Hr1G056550.8 | Barley | cytosol | 15.76 | 6.73 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G070720.5 | EnsemblPlantsGene:HORVU4Hr1G070720 | Gene3D:1.10.287.110 | InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR23172 |
| PANTHER:PTHR23172:SF55 | SEG:seg | SUPFAM:SSF46565 | UniParc:UPI000B46EF72 | UniProt:A0A287PK70 | MapMan:20.5.7 |
| MapMan:22.1.6.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:577391258..577397901
Molecular Weight (calculated)
74341.1 Da
IEP (calculated)
8.624
GRAVY (calculated)
-0.839
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: PVPATLHATK PSCARHLLGQ FPAATPTRVG VAMAGAPRRS DVDFADVFGG PPRRSSGSDR GRRSSLDSPS GSGSGSASRA RSGAEERPAF GDRTSSGFAS
101: RERRSGGESG PGERPVFGDR TSSERRQLGQ EFYKDIFPGG EPPASPRRGG ASGDRDVFGA PTSPGGSTSR LLSRSSFSMK FTGGVDSSVP TSPSRHTSNR
201: NDDDTSYGYS VPVSPNSSTN SSFAQGVSQQ DSKKNPFSWH RYPFLSRFRS SGDKKEKDTS QRVNSMDSEC EGTPISSASF ISSDKFHFSF YKWAGKGALL
301: MLPASVQEKD GNIIGVRSFP QVVLQGIDLI DEEESMSTAT PASKSQTDYE DYKSGKDGLF ERKHSINSTT KEESSVFDEY LQGDNSKEAG TKKSINNAKN
401: NVSAGSPRTQ SSRPPSGEKS RGSRVLKDFI KIFSPEVSPK RKVAVEAQDH FSGKNGSKGG VEDKFSISDL ETGEDIKTDK TNNQNAFSSA AAQMKDIQGR
501: MEKPILTVDD EMLTRTGKLS GKEDVKPPSS DKLFHVETEE KVRDTTSREE SHMENLEECV VEHLDEDQIL QDDNEKEQIK ISQSKIREWS KGKEGNIRSL
601: LSTLQYVLWP ESGWKPVPLV NIIEGAAVKK AYQRALLCLH PDKLQQRGAA MHQKYIAEKV FEILQVPWIY PKCLHVKEN
101: RERRSGGESG PGERPVFGDR TSSERRQLGQ EFYKDIFPGG EPPASPRRGG ASGDRDVFGA PTSPGGSTSR LLSRSSFSMK FTGGVDSSVP TSPSRHTSNR
201: NDDDTSYGYS VPVSPNSSTN SSFAQGVSQQ DSKKNPFSWH RYPFLSRFRS SGDKKEKDTS QRVNSMDSEC EGTPISSASF ISSDKFHFSF YKWAGKGALL
301: MLPASVQEKD GNIIGVRSFP QVVLQGIDLI DEEESMSTAT PASKSQTDYE DYKSGKDGLF ERKHSINSTT KEESSVFDEY LQGDNSKEAG TKKSINNAKN
401: NVSAGSPRTQ SSRPPSGEKS RGSRVLKDFI KIFSPEVSPK RKVAVEAQDH FSGKNGSKGG VEDKFSISDL ETGEDIKTDK TNNQNAFSSA AAQMKDIQGR
501: MEKPILTVDD EMLTRTGKLS GKEDVKPPSS DKLFHVETEE KVRDTTSREE SHMENLEECV VEHLDEDQIL QDDNEKEQIK ISQSKIREWS KGKEGNIRSL
601: LSTLQYVLWP ESGWKPVPLV NIIEGAAVKK AYQRALLCLH PDKLQQRGAA MHQKYIAEKV FEILQVPWIY PKCLHVKEN
001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
Arabidopsis Description
JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.