Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400071608 | Potato | nucleus | 89.64 | 92.98 |
| PGSC0003DMT400071606 | Potato | nucleus | 70.44 | 90.59 |
| KRH61195 | Soybean | nucleus | 31.91 | 36.49 |
| VIT_18s0001g12100.t01 | Wine grape | nucleus | 35.5 | 33.55 |
| KRH51877 | Soybean | nucleus | 32.18 | 32.36 |
| CDY45410 | Canola | nucleus | 26.52 | 32.32 |
| AT1G75100.1 | Thale cress | nucleus | 28.73 | 31.95 |
| Bra015866.1-P | Field mustard | nucleus | 28.04 | 31.82 |
| CDX73142 | Canola | nucleus | 25.55 | 31.25 |
| Os03t0198300-02 | Rice | nucleus | 23.62 | 28.17 |
| EER95331 | Sorghum | nucleus, plastid | 22.79 | 28.01 |
| Zm00001d048175_P002 | Maize | nucleus | 22.65 | 27.52 |
| GSMUA_Achr7P25970_001 | Banana | nucleus | 25.69 | 26.92 |
| TraesCS4A01G041000.2 | Wheat | nucleus, plastid | 23.07 | 26.3 |
| TraesCS4B01G261900.1 | Wheat | nucleus, plastid | 23.07 | 26.18 |
| TraesCS4D01G261900.1 | Wheat | nucleus, plastid | 23.07 | 25.97 |
| HORVU4Hr1G070720.5 | Barley | mitochondrion | 22.79 | 24.3 |
| CDY59467 | Canola | mitochondrion | 26.24 | 19.21 |
| Solyc06g060090.2.1 | Tomato | nucleus | 11.46 | 17.04 |
| Solyc06g082840.2.1 | Tomato | nucleus | 16.71 | 12.56 |
| Solyc09g018960.2.1 | Tomato | nucleus | 15.61 | 12.27 |
| Solyc02g085030.2.1 | Tomato | nucleus | 15.61 | 8.04 |
| Solyc04g080600.2.1 | Tomato | nucleus | 15.33 | 7.35 |
Protein Annotations
| EnsemblPlants:Solyc04g080040.2.1 | EnsemblPlantsGene:Solyc04g080040.2 | Gene3D:1.10.287.110 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006898 |
| GO:GO:0008150 | GO:GO:0031982 | InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR23172 | PANTHER:PTHR23172:SF55 |
| SEG:seg | SUPFAM:SSF46565 | UniParc:UPI0002765655 | UniProt:K4BV83 | MapMan:20.5.7 | MapMan:22.1.6.4 |
Description
No Description!
Coordinates
chr4:-:64332561..64338195
Molecular Weight (calculated)
81425.0 Da
IEP (calculated)
9.644
GRAVY (calculated)
-0.993
Length
724 amino acids
Sequence
(BLAST)
(BLAST)
001: MERISQKEHV LVDYGPQRSF EGSPSDMDMD FNDVFGGPPR RFSVQEARTR HSFNDSVESE EDSAGVSRNS WNGFNEKPVF GEENVNRRRN KGGDFYDDIF
101: KVDEKSYSSS PVRPLSPKIE VFGTSLPAQF SLPTKLTKAT DLPTFASGSH SPHRKREKEM KNDVPVFYRQ SPLSREGTVI GDDLRYMSES DEQDIGGHLK
201: KSGENMEDSS SEYQFHFSIY KWAGKGVPML VSLKGGKHFK SNEKIKFEKC SSSNARMEKD NTFTSSPLGG NVNFSRDANF HSFSTRSKNP ESSDKGNGIV
301: GETLGIPKSK SVQSFKDDVG VYDTMLPTER EVEEHQFRKK TGLSDGIQIE IKKNSEETKK AQLKPLRAFL VNVAEEKGDI NMAQETERKS NTVKVTQAAK
401: TNVKVKENVK KIDNEADNKL KKGDVEVSEN TQKRDSQAKR KGKRGPDKKI VVDTGVNRSS PPSSPKRSAE NSTKAGIKGK VQDFVKMFNH EVHSTPQEVD
501: SRSKSYKWKC SSNSGVESEK SYSMPKANEK VQLPTVNKTQ DATPNVDKNF DKLGKTTKYS QRKTEIPQTK DYSDQKAAPS TNESRRDDRK VSVGNMDELF
601: GGNFVVEELF EDQDTASQTN GKSEDNQASD AKIKQWSQGR KGNIRSLLST LQLVLWPESG WKPVALMDLM EGNQVKRAYQ RALLYIHPDK LQQKGAAAHQ
701: KYIAAKVFDI LQEAWDHFNL IAPM
101: KVDEKSYSSS PVRPLSPKIE VFGTSLPAQF SLPTKLTKAT DLPTFASGSH SPHRKREKEM KNDVPVFYRQ SPLSREGTVI GDDLRYMSES DEQDIGGHLK
201: KSGENMEDSS SEYQFHFSIY KWAGKGVPML VSLKGGKHFK SNEKIKFEKC SSSNARMEKD NTFTSSPLGG NVNFSRDANF HSFSTRSKNP ESSDKGNGIV
301: GETLGIPKSK SVQSFKDDVG VYDTMLPTER EVEEHQFRKK TGLSDGIQIE IKKNSEETKK AQLKPLRAFL VNVAEEKGDI NMAQETERKS NTVKVTQAAK
401: TNVKVKENVK KIDNEADNKL KKGDVEVSEN TQKRDSQAKR KGKRGPDKKI VVDTGVNRSS PPSSPKRSAE NSTKAGIKGK VQDFVKMFNH EVHSTPQEVD
501: SRSKSYKWKC SSNSGVESEK SYSMPKANEK VQLPTVNKTQ DATPNVDKNF DKLGKTTKYS QRKTEIPQTK DYSDQKAAPS TNESRRDDRK VSVGNMDELF
601: GGNFVVEELF EDQDTASQTN GKSEDNQASD AKIKQWSQGR KGNIRSLLST LQLVLWPESG WKPVALMDLM EGNQVKRAYQ RALLYIHPDK LQQKGAAAHQ
701: KYIAAKVFDI LQEAWDHFNL IAPM
001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
Arabidopsis Description
JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.