CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73142	Canola	nucleus	37.41	62.5
CDY45410	Canola	nucleus	37.51	62.46
AT1G75100.1	Thale cress	nucleus	40.85	62.06
KRH61195	Soybean	nucleus	19.92	31.12
VIT_18s0001g12100.t01	Wine grape	nucleus	21.44	27.68
PGSC0003DMT400071608	Potato	nucleus	19.31	27.36
KRH51877	Soybean	nucleus	19.82	27.22
Solyc04g080040.2.1	Tomato	nucleus	19.21	26.24
Os03t0198300-02	Rice	nucleus	15.47	25.21
CDX88363	Canola	cytosol	5.97	24.69
EER95331	Sorghum	nucleus, plastid	13.65	22.92
Zm00001d048175_P002	Maize	nucleus	13.65	22.65
TraesCS4A01G041000.2	Wheat	nucleus, plastid	14.26	22.2
TraesCS4B01G261900.1	Wheat	nucleus, plastid	14.26	22.1
TraesCS4D01G261900.1	Wheat	nucleus, plastid	14.36	22.08
GSMUA_Achr7P25970_001	Banana	nucleus	15.37	22.0
PGSC0003DMT400071606	Potato	nucleus	12.44	21.85
CDX87523	Canola	cytosol	6.47	20.91
HORVU4Hr1G070720.5	Barley	mitochondrion	14.26	20.77
CDY54130	Canola	cytosol	5.56	19.71
CDX90242	Canola	nucleus	7.79	18.42
CDX77599	Canola	nucleus	8.09	18.39
CDY70725	Canola	nucleus	7.89	18.14
CDY26275	Canola	cytosol	7.79	17.78
CDX98192	Canola	nucleus	7.58	17.4
CDY04660	Canola	cytosol	7.08	14.61
CDY00396	Canola	nucleus	7.48	14.12
CDY21468	Canola	cytosol	4.85	14.04
CDY08188	Canola	nucleus	6.77	13.76
CDY01318	Canola	cytosol	7.08	13.62
CDY31429	Canola	plastid	8.8	10.66
CDX76445	Canola	nucleus	8.9	10.55
CDX75581	Canola	nucleus	8.7	7.16
CDX69230	Canola	nucleus	8.7	7.05
CDX73162	Canola	nucleus	9.3	6.64
CDY45424	Canola	nucleus	9.4	6.48

Protein Annotations

Gene3D:1.10.287.110	MapMan:18.1.2.1.4	MapMan:20.5.7	MapMan:21.4.1.3.3.2	MapMan:22.1.6.4	GO:A0A078J822
UniProt:A0A078J822	EnsemblPlants:CDY59467	ProteinID:CDY59467	ProteinID:CDY59467.1	ncoils:Coil	InterPro:DnaJ_domain
GO:GO:0000139	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016740	GO:GO:0016757	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00026157001	InterPro:IPR001623
InterPro:IPR029044	InterPro:IPR036869	InterPro:J_dom_sf	InterPro:Nucl-diP-sugar_transferase	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03407
PFscan:PS51257	PANTHER:PTHR23172	PANTHER:PTHR23172:SF55	SUPFAM:SSF46565	SUPFAM:SSF53448	TMHMM:TMhelix
UniParc:UPI0004EEA967	SEG:seg	:	:	:	:

Description

BnaCnng34990DGlycosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A078J822]

Coordinates

chrLK033765:-:41892..46527

Molecular Weight (calculated)

110230.0 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.541

Length

989 amino acids

Sequence
(BLAST)

001: MTMAGRRDRL HHLRGSRIAI AILVGILIGC ICTVLFPDGF FNSGSSFTVN EQRLSQSTTS KVGQASCESS ERVKMLKSDF ALISEKNAEL RKQVRELTEK
101: VRLAEQDTEN TRKQVLVLGT EIKAGSFGTV KSLRTNPTVV SDESFNPRLA KLLEKVAVNN EIIVVLANSN VKPMLEVQIA SVKRVGIQNY LVVALDDSIE
201: NFCKSNGVAY YTSGGNHTVS GLKFRVLREF LQLGYGVLLS NVDIVFLQNP FGHLYRDSDV ETTSDGHDNS TAYGFNNGFD EPSMGWARYA HTMRIWVFNS
301: GFFYLRPTLP SIELLDRVAD TLSKADAWDQ AVFNEQLFYP SHPGYTGLHA SKRVMDMYEF MNSKVLFKTV RKDHELKKLK PVIVHLNYHP DKLSRMQAVV
401: EFYVNGKQDA LDSFPDDSFC AMQTFPSSET FLLASNSPPL LLNPGGDDVD IDFRDVFGGP PKRRSKVNEL TRHSFSDTAL RRLDVNVDNS ALVPRDDLWN
501: VRNEKPVFGE DTSVRRRFTA DDFFDDIFGA NEPSKHIRSP AQPLPHEAES HAKQVKATEI PTFGSATASS SPLSRTSDMV GSAAKSGSDG YVSPQVVNGK
601: GRQFHFSIYK WSNKGVPVVI WGIVEGWVTY REVIRDSMRV RQKHGKSSGG DCKKAGKDEK TEIDSTSEKV LSGNVSKAHE ANVKPDKDKR RDEDIVFKRE
701: VRKDRMEAKT MGSSDGDSRI KKKEQGRRSS LDSPMPDKAC FASTHAAPEV GKDGVKGKVM DFVKIFSQGA SAGAGGESLG KSSRWRAKES LATDINKDGA
801: KTRETGNIPD QQTKPIPDIP AMATQRKVSD RVNVNNNKTS GVTEQEKRQE PSKTHTTSED IDEPIHVNFM VEDVTQDENS LEETKNDAEE IQNIDAKIRK
901: WSSGKSGNIR SLLSTLPYIL WPGCGWKAVP LMDLIEGNAV RKSYQRALLI LHPDKLQPKG ASDNQKYMAE KVFELLQEAW DHFNTLGPV

Best Arabidopsis Sequence Match ( AT1G75110.1 )
(BLAST)

001: MAGRRDRIQQ LRGSRIAIAI FVGILIGCVC SVLFPNGFFN SGSSLIANEE RISKSTSTDG LASCESSERV KMLKSDFSII SVKNAELRKQ VRELTEKVRL
101: AEQETENARK QVLVLGSEIK AGPFGTVKSL RTNPTVVPDE SVNPRLAKLL EKVAVNKEII VVLANSNVKP MLELQIASVK RVGIQNYLIV ALDDSMESFC
201: ESKEVVFYKR DPDKAVDMVG KSGGNHAVSG LKFRVLREFL QLGYSVLLSD VDIVFLQNPF SHLHRDSDVE SMSDGHDNNT AYGFNDVFDE PSMGWARYAH
301: TMRIWVFNSG FFYLRPTIPS IDLLDRVADT LSKSEAWDQA VFNEQLFYPS HPGYTGLHAS KRVMDMYEFM NSKVLFKTVR KNQELKKLKP VIVHLNYHPD
401: KLERMHAVVE FYVNGKQDAL DSFPDGSD

Arabidopsis Description

RRA2Arabinosyltransferase RRA2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Q5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.