Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01318 | Canola | cytosol | 88.55 | 90.27 |
| CDY04660 | Canola | cytosol | 73.66 | 80.58 |
| CDY08188 | Canola | nucleus | 71.56 | 77.0 |
| KRG89681 | Soybean | extracellular, golgi | 12.21 | 76.19 |
| AT1G21660.1 | Thale cress | nucleus | 75.95 | 76.1 |
| CDX88363 | Canola | cytosol | 30.15 | 66.11 |
| CDX87523 | Canola | cytosol | 33.59 | 57.52 |
| PGSC0003DMT400030755 | Potato | nucleus | 20.8 | 56.19 |
| KRH64620 | Soybean | nucleus | 42.56 | 43.13 |
| KRH53284 | Soybean | nucleus | 41.98 | 42.64 |
| VIT_18s0001g01980.t01 | Wine grape | cytosol | 37.98 | 38.57 |
| Solyc06g060090.2.1 | Tomato | nucleus | 34.73 | 37.37 |
| CDY31429 | Canola | plastid | 38.74 | 24.88 |
| CDX76445 | Canola | nucleus | 39.12 | 24.58 |
| Os01t0355500-02 | Rice | nucleus | 38.55 | 21.31 |
| OQU86832 | Sorghum | nucleus | 37.02 | 20.23 |
| CDY54130 | Canola | cytosol | 8.78 | 16.49 |
| Zm00001d040795_P002 | Maize | cytosol | 28.63 | 16.32 |
| CDX90242 | Canola | nucleus | 12.98 | 16.27 |
| CDY70725 | Canola | nucleus | 12.98 | 15.81 |
| CDX77599 | Canola | nucleus | 12.98 | 15.63 |
| CDX98192 | Canola | nucleus | 12.79 | 15.55 |
| CDY26275 | Canola | cytosol | 12.79 | 15.47 |
| CDY45410 | Canola | nucleus | 14.12 | 12.46 |
| CDX73142 | Canola | nucleus | 13.74 | 12.16 |
| CDX75581 | Canola | nucleus | 24.81 | 10.82 |
| CDY21468 | Canola | cytosol | 7.06 | 10.82 |
| CDX69230 | Canola | nucleus | 24.62 | 10.58 |
| CDX73162 | Canola | nucleus | 23.09 | 8.73 |
| CDY45424 | Canola | nucleus | 22.9 | 8.36 |
| CDY59467 | Canola | mitochondrion | 14.12 | 7.48 |
Protein Annotations
| EnsemblPlants:CDY00396 | EnsemblPlantsGene:GSBRNA2T00110025001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | PANTHER:PTHR23172 | PANTHER:PTHR23172:SF51 | PFscan:PS50076 | ProteinID:CDY00396 | ProteinID:CDY00396.1 |
| SEG:seg | SUPFAM:SSF46565 | UniParc:UPI0004EE4068 | MapMan:22.1.6.4 | : | : |
Description
BnaC07g14300D
Coordinates
chrLK031918:+:524910..527943
Molecular Weight (calculated)
56221.8 Da
IEP (calculated)
6.410
GRAVY (calculated)
-0.625
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEFGVLTER YGIKPQGKSA PMAASKRPPN NAPSWKNLGG VNPKSTSYSS NKVSVNDDDI FFTSSSTNRN GSSSGGFDDF DVFGGGLNKP DTKSSSLNDD
101: DLMFSTNFGM KTSSSSSSSS AQGFADVDLF GAVPVSNSSV GNDDIFGAFS QDAAGVDDLL GGSGKNGFDE LIPGFGGSSQ TTSSKTTASS NFADADPFVV
201: LESTTSAPHS SSGLFVDPLD VFAASVTSQG KKPSQSSSTK LKPPPKPTPK VDRVKSSGLS SIDELEDFAM GSTSTTMRRS ASASDTASKF REAEDAGTKT
301: KQFGVDDLDS FFSAGHRSSS VPKSRATTEA TRKQAAVNVP KKTPNGVSSA KKPPPPANLV DDFSALFGGD PIFREFEEIP GESDERRKAR WDREQRTKSR
401: VAQAVADMNS RDHQSRIEQE HRTRISESVD AEIRRWATGK EGNMRALLSS LQIVLWPGCG WEAVSLTDLI TSSAVKKVYR KATLYVHPDK VQQKGATLEQ
501: KFIAEKVFDI LKEAWNKFNK EELS
101: DLMFSTNFGM KTSSSSSSSS AQGFADVDLF GAVPVSNSSV GNDDIFGAFS QDAAGVDDLL GGSGKNGFDE LIPGFGGSSQ TTSSKTTASS NFADADPFVV
201: LESTTSAPHS SSGLFVDPLD VFAASVTSQG KKPSQSSSTK LKPPPKPTPK VDRVKSSGLS SIDELEDFAM GSTSTTMRRS ASASDTASKF REAEDAGTKT
301: KQFGVDDLDS FFSAGHRSSS VPKSRATTEA TRKQAAVNVP KKTPNGVSSA KKPPPPANLV DDFSALFGGD PIFREFEEIP GESDERRKAR WDREQRTKSR
401: VAQAVADMNS RDHQSRIEQE HRTRISESVD AEIRRWATGK EGNMRALLSS LQIVLWPGCG WEAVSLTDLI TSSAVKKVYR KATLYVHPDK VQQKGATLEQ
501: KFIAEKVFDI LKEAWNKFNK EELS
001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS
Arabidopsis Description
At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.