Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017937.1-P | Field mustard | nucleus | 99.18 | 99.18 |
| CDY04660 | Canola | cytosol | 86.65 | 88.1 |
| CDY01318 | Canola | cytosol | 76.39 | 72.37 |
| CDY00396 | Canola | nucleus | 77.0 | 71.56 |
| AT1G21660.1 | Thale cress | nucleus | 74.13 | 69.02 |
| KRG89681 | Soybean | extracellular, golgi | 11.29 | 65.48 |
| CDX88363 | Canola | cytosol | 29.57 | 60.25 |
| PGSC0003DMT400030755 | Potato | nucleus | 21.15 | 53.09 |
| CDX87523 | Canola | cytosol | 33.06 | 52.61 |
| KRH64620 | Soybean | nucleus | 42.3 | 39.85 |
| KRH53284 | Soybean | nucleus | 41.89 | 39.53 |
| VIT_18s0001g01980.t01 | Wine grape | cytosol | 38.6 | 36.43 |
| Solyc06g060090.2.1 | Tomato | nucleus | 35.32 | 35.32 |
| CDY31429 | Canola | plastid | 40.04 | 23.9 |
| CDX76445 | Canola | nucleus | 40.45 | 23.62 |
| Os01t0355500-02 | Rice | nucleus | 37.58 | 19.3 |
| OQU86832 | Sorghum | nucleus | 36.55 | 18.56 |
| CDY54130 | Canola | cytosol | 9.65 | 16.85 |
| CDX90242 | Canola | nucleus | 13.55 | 15.79 |
| Zm00001d040795_P002 | Maize | cytosol | 28.75 | 15.23 |
| CDY70725 | Canola | nucleus | 13.35 | 15.12 |
| CDY26275 | Canola | cytosol | 13.14 | 14.78 |
| CDX77599 | Canola | nucleus | 13.14 | 14.71 |
| CDX98192 | Canola | nucleus | 12.73 | 14.39 |
| CDY45410 | Canola | nucleus | 13.76 | 11.28 |
| CDX73142 | Canola | nucleus | 13.55 | 11.15 |
| CDY21468 | Canola | cytosol | 7.8 | 11.11 |
| CDX75581 | Canola | nucleus | 25.05 | 10.16 |
| CDX69230 | Canola | nucleus | 24.85 | 9.93 |
| CDX73162 | Canola | nucleus | 23.0 | 8.08 |
| CDY45424 | Canola | nucleus | 22.79 | 7.73 |
| CDY59467 | Canola | mitochondrion | 13.76 | 6.77 |
Protein Annotations
| EnsemblPlants:CDY08188 | EnsemblPlantsGene:GSBRNA2T00125490001 | Gene3D:1.10.287.110 | InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR23172 |
| PANTHER:PTHR23172:SF51 | ProteinID:CDY08188 | ProteinID:CDY08188.1 | SEG:seg | SUPFAM:SSF46565 | UniParc:UPI0004EF3674 |
| UniProt:A0A078F8V6 | MapMan:22.1.6.4 | : | : | : | : |
Description
BnaA06g15380DBnaA06g15380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8V6]
Coordinates
chrLK031983:-:926416..929078
Molecular Weight (calculated)
52639.8 Da
IEP (calculated)
7.810
GRAVY (calculated)
-0.654
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEFGVLTER YGIKPQGKSA PMAASKRSHN TPNWKSYASS SSSNKVSGNG DDIFFTSSST TTTMNGASSG DFDVFGGMNN KNSKSSSSAH ADDLFGAMPT
101: APNNDDDIFG SFSSSTNQYP PVDDLLAGFG ALNSKTFNLN NSSASDELIP GFGFGTSHSK TTASNFVDTD PFVVLESTMS GAHSSSGIFV DPLDAFAASV
201: SSQGQKPSNN TTHSSTKLKP PPKPTQKVNR AKSSVMSSVD ELDDFSMGGT MRRSASASDA ASKYREAQET KQFGVDDLDS FFSSGPRSSS VPKSRTATEA
301: PRKPAVNVPK KTTNGVSSAK KPPAPAANLV DDFSALFGED PPIFKEFEEI PGETEERRKA RWDREQRTKS RVAQAVADMN NRDHQSRIEQ EQRTRISETA
401: DAEIKRWATG KEGNMRALLS SLQIVLWPGC GWEAVSLTDL ITSSAVKKVY RKATLYVHPD KVQQKGATLE QKYIAEKVFD ILKVFSH
101: APNNDDDIFG SFSSSTNQYP PVDDLLAGFG ALNSKTFNLN NSSASDELIP GFGFGTSHSK TTASNFVDTD PFVVLESTMS GAHSSSGIFV DPLDAFAASV
201: SSQGQKPSNN TTHSSTKLKP PPKPTQKVNR AKSSVMSSVD ELDDFSMGGT MRRSASASDA ASKYREAQET KQFGVDDLDS FFSSGPRSSS VPKSRTATEA
301: PRKPAVNVPK KTTNGVSSAK KPPAPAANLV DDFSALFGED PPIFKEFEEI PGETEERRKA RWDREQRTKS RVAQAVADMN NRDHQSRIEQ EQRTRISETA
401: DAEIKRWATG KEGNMRALLS SLQIVLWPGC GWEAVSLTDL ITSSAVKKVY RKATLYVHPD KVQQKGATLE QKYIAEKVFD ILKVFSH
001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS
Arabidopsis Description
At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.