CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90242	Canola	nucleus	92.33	94.98
CDX77599	Canola	nucleus	83.49	82.53
CDX98192	Canola	nucleus	82.56	82.37
CDY26275	Canola	cytosol	80.47	79.91
AT1G30280.1	Thale cress	cytosol	82.79	78.24
CDY21468	Canola	cytosol	59.3	74.56
CDY54130	Canola	cytosol	47.67	73.48
KRH37791	Soybean	nucleus	43.02	39.53
KRH12827	Soybean	nucleus	42.33	39.06
VIT_10s0003g04050.t01	Wine grape	nucleus	43.72	38.68
KRH58698	Soybean	nucleus	41.63	38.49
KRH44795	Soybean	nucleus	40.23	38.19
KRH42596	Soybean	nucleus	41.16	37.18
CDX88363	Canola	cytosol	13.02	23.43
CDX87523	Canola	cytosol	12.79	17.97
CDY04660	Canola	cytosol	15.58	13.99
CDY08188	Canola	nucleus	15.12	13.35
CDY00396	Canola	nucleus	15.81	12.98
CDX73142	Canola	nucleus	17.21	12.5
CDY01318	Canola	cytosol	14.88	12.45
CDY45410	Canola	nucleus	16.98	12.29
CDX76445	Canola	nucleus	20.7	10.67
CDY31429	Canola	plastid	20.23	10.66
CDY59467	Canola	mitochondrion	18.14	7.89
CDX75581	Canola	nucleus	20.7	7.41
CDX69230	Canola	nucleus	20.93	7.38
CDX73162	Canola	nucleus	20.7	6.42
CDY45424	Canola	nucleus	20.23	6.06

Protein Annotations

EnsemblPlants:CDY70725	EnsemblPlantsGene:GSBRNA2T00006943001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR23172	PANTHER:PTHR23172:SF39	ProteinID:CDY70725	ProteinID:CDY70725.1
SEG:seg	SUPFAM:SSF46565	UniParc:UPI0004EC680D	UniProt:A0A078JWB6	MapMan:22.1.6.4	:

Description

BnaCnng69510DBnaCnng69510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWB6]

Coordinates

chrLK043070:-:483..2148

Molecular Weight (calculated)

48265.5 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.825

Length

430 amino acids

Sequence
(BLAST)

001: MDESWRKKMG LNVDSFFSVA RRSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEVFLSPGIS SGGSLPSSKS HGRNLTAFRI PSGVDEFYDG
101: IFGGRGGAAK KQSTPAIPKS RSNSSSVLTS EEVSPHYPPP AATSGDDAGF SSFTSRLRPL NVPSRSHKRE SKKQSFPVFP TSGDSFSGHE RSDFYYRKPY
201: FSLSRRSSPE TMGLDPSSFR RIDDFGPSSP ASSPVSSFVY EEEDTETKQR TKGDCNVEEV EEEEDEMSSY VIEINSDRFD RGNSDSNDMD EAIAWAKERS
301: QRPEAKQAQE EDLMDSRSEE AKSEEEMEME MKDEEIRIWL TGKETNIRLL LSTLHHVLWS DSNWHEIPLE NLRDGSQVKK AYQKARLCLH PDKLQQRGGT
401: SPVQKSVASR VFSILQEAWA VYVTNEGLSS

Best Arabidopsis Sequence Match ( AT1G30280.1 )
(BLAST)

001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C752]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.