CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12827	Soybean	nucleus	93.59	93.99
KRH58698	Soybean	nucleus	73.93	74.41
KRH44795	Soybean	nucleus	71.15	73.51
KRH42596	Soybean	nucleus	72.01	70.8
VIT_10s0003g04050.t01	Wine grape	nucleus	61.54	59.26
KRG89681	Soybean	extracellular, golgi	8.97	50.0
Bra010780.1-P	Field mustard	nucleus	40.6	45.45
CDX90242	Canola	nucleus	40.38	45.22
Bra014876.1-P	Field mustard	nucleus	41.03	44.24
CDX77599	Canola	nucleus	41.03	44.14
AT1G30280.1	Thale cress	cytosol	42.52	43.74
CDY26275	Canola	cytosol	40.17	43.42
Bra032375.1-P	Field mustard	cytosol	40.17	43.42
CDX98192	Canola	nucleus	39.96	43.39
CDY70725	Canola	nucleus	39.53	43.02
CDY54130	Canola	cytosol	25.64	43.01
CDY21468	Canola	cytosol	29.49	40.35
KRH53284	Soybean	nucleus	18.59	16.86
KRH64620	Soybean	nucleus	18.59	16.83
KRH61195	Soybean	nucleus	20.73	15.32
KRH51877	Soybean	nucleus	21.37	13.89
KRH53945	Soybean	nucleus, plastid	24.36	12.36
KRH40961	Soybean	endoplasmic reticulum	23.29	11.67
KRH63993	Soybean	nucleus, plastid	22.22	11.4
KRH59609	Soybean	nucleus	23.29	11.09
KRH75084	Soybean	nucleus	23.08	8.07
KRH69887	Soybean	nucleus	24.36	7.92
KRH70946	Soybean	nucleus	22.22	7.84
KRH28713	Soybean	nucleus	22.65	7.64
KRH76753	Soybean	nucleus	22.44	7.48
KRH08235	Soybean	nucleus	8.33	4.86

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100813550	MapMan:22.1.6.4	EMBL:ACUP02005512	InterPro:DnaJ_domain	EnsemblPlantsGene:GLYMA_09G089500
GO:GO:0005575	GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K7LCP1	EnsemblPlants:KRH37791	ProteinID:KRH37791	ProteinID:KRH37791.1
ProteinID:KRH37792.1	PANTHER:PTHR23172	PANTHER:PTHR23172:SF39	SUPFAM:SSF46565	UniParc:UPI000233D4CB	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:11935992..11940216

Molecular Weight (calculated)

52299.3 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.749

Length

468 amino acids

Sequence
(BLAST)

001: MDESWRMRMG QTPGLPRRRS MEDRSSARTR LSIFAGAGAG EQETLDPDDF ADVFGGPPRS LLAHKFSRSN SFYEEIFRPP VFASPAPAKG GRSLPVFRIP
101: AKNEAFYNDI FGSDDDRRSR ERSGPQSKAK SKSNSSSALS SEELSPLRPS AGDDAALSAF ASKLRPINVP CRWNSTTMMP GEHPIKQGGP FYPCNSQSFE
201: NQFQDNEYKE SFKSSHLGFS RRVSSPETIS LESNSYQSMK ISADDWELSS PFSAVSGLCQ EPEAKSSVHD HLFPELVIEQ DDDDDDEVMS SYVIEVNSNL
301: REESCGTADI DEAIAWAKEK FQSRNSDEES SSRNEGNEQT TTRVEGRSDA DECHGDGIEV KSSKVQTETE KLDRDIRLWS SGKETDIRLL LSTLHHILWS
401: ESGWYAVPLP NLIESSQVKK AYQKARLCLH PDKLQQRGAT LLQKYIAEKA FSILQDAWTG FISEDVSL

Best Arabidopsis Sequence Match ( AT1G30280.1 )
(BLAST)

001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C752]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.