CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052312	Potato	cytosol	10.17	91.35
KRH59609	Soybean	nucleus	94.65	89.93
KRG89681	Soybean	extracellular, golgi	6.64	73.81
KRH53945	Soybean	nucleus, plastid	72.7	73.64
KRH63993	Soybean	nucleus, plastid	70.88	72.59
VIT_00s0188g00210.t01	Wine grape	plastid	11.78	67.9
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	58.99	57.52
GSMUA_Achr2P02260_001	Banana	nucleus	16.7	56.32
CDY31429	Canola	plastid	48.18	55.15
Solyc09g018960.2.1	Tomato	nucleus	54.28	55.05
PGSC0003DMT400071173	Potato	nucleus	55.46	54.3
CDX76445	Canola	nucleus	48.29	54.08
Bra020913.1-P	Field mustard	nucleus	48.39	54.07
Solyc06g082840.2.1	Tomato	nucleus	55.14	53.48
HORVU5Hr1G024350.1	Barley	plasma membrane	41.54	52.57
AT4G12770.1	Thale cress	nucleus	50.0	52.41
Zm00001d041647_P004	Maize	nucleus	49.57	52.38
EES17168	Sorghum	mitochondrion, nucleus	50.21	52.29
GSMUA_Achr11P...	Banana	nucleus	51.61	51.94
PGSC0003DMT400052311	Potato	nucleus	46.36	51.3
AT4G12780.1	Thale cress	nucleus	49.46	51.11
Os12t0548200-02	Rice	plasma membrane	50.43	50.92
TraesCS5A01G092500.2	Wheat	nucleus	48.18	50.45
TraesCS5D01G104700.2	Wheat	nucleus	47.75	50.17
Zm00001d023838_P014	Maize	mitochondrion, nucleus	48.07	49.72
TraesCS5B01G098600.2	Wheat	nucleus	47.43	49.66
GSMUA_Achr1P26650_001	Banana	nucleus	46.68	49.66
GSMUA_Achr3P24020_001	Banana	nucleus	41.86	49.0
KRH53284	Soybean	nucleus	25.7	46.51
KRH64620	Soybean	nucleus	25.7	46.42
Os11t0661200-01	Rice	nucleus	43.79	46.06
EES08933	Sorghum	nucleus, plastid	44.11	45.32
TraesCS4D01G145200.4	Wheat	nucleus	41.97	44.49
Zm00001d007692_P003	Maize	plasma membrane	42.18	44.42
HORVU4Hr1G033280.4	Barley	nucleus	41.86	42.0
TraesCS4B01G126200.1	Wheat	nucleus	41.33	41.33
TraesCS4A01G169200.1	Wheat	nucleus	41.76	41.31
KRH12827	Soybean	nucleus	11.88	23.82
KRH37791	Soybean	nucleus	11.67	23.29
KRH58698	Soybean	nucleus	11.13	22.37
KRH44795	Soybean	nucleus	10.81	22.3
KRH42596	Soybean	nucleus	11.03	21.64
KRH28713	Soybean	nucleus	26.87	18.08
KRH76753	Soybean	nucleus	26.98	17.95
KRH69887	Soybean	nucleus	27.62	17.92
KRH61195	Soybean	nucleus	11.67	17.22
KRH51877	Soybean	nucleus	12.21	15.83
KRH70946	Soybean	nucleus	22.38	15.76
KRH75084	Soybean	nucleus	22.27	15.55
KRH08235	Soybean	nucleus	8.24	9.6

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100781426	MapMan:22.1.6.4	EMBL:ACUP02004743	ncoils:Coil	InterPro:DnaJ_domain
EnsemblPlantsGene:GLYMA_08G002300	GO:GO:0005575	GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0031982
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K7L479	EnsemblPlants:KRH40961	ProteinID:KRH40961
ProteinID:KRH40961.1	ProteinID:KRH40962.1	PFscan:PS50076	PANTHER:PTHR23172	PANTHER:PTHR23172:SF54	SUPFAM:SSF46565
UniParc:UPI0002951B91	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:161660..170288

Molecular Weight (calculated)

103337.0 Da

IEP (calculated)

6.499

GRAVY (calculated)

-1.025

Length

934 amino acids

Sequence
(BLAST)

001: MLFPSHHHTI PLHPHTPDPT MNDFDGLFTS DFGLKPQGKS APMAPQSKGS SNSASLNLDF GSRSSSNFDD LLAGAGSDNR RSDSPFDLDS MYGGPPARST
101: NSPPPPVYDK PVYDDDIFDG VPGLKSTSKV KFDDVFATTT ESGRGAAFDD LLGGFGKESK SSDGKRSEKD GKGVSDLDDL LAGFGHSRSS SGGRHTPDIG
201: LSSEPTASAS KTTPTSAEDP FKVFESASAP VDSSAGHFMD PLEEISKFSS SRSTKNDSSS TSNGKVYEDI DPFDGLGKSA PAFSSERNSR KGSSSPRLNT
301: STSWTGDKEP VDKISGRSPE RHTQNKIPVE NDREFPHVPF HMPTYSSDSD KPVGPRPTSP PYDNVDFRQT NVQADMSPKY EDNLEPSEDI WLTVSEIPLF
401: TQPTTAPPPS RPPPPRPVHI PKSGTSSPAS ANARKKTNEF SSFPGSTRFA QGPKSAPAAE RVPPSSQFDE LDDFAMGRSR GNDNESANGF LPDEELEMNS
501: AAAAMKEAMD RAEAKFRHAK EVREREYSKA ARSKEAVQME KDERTVLEER ENQERLDRER QQKEREEKEQ RRLMKEREEK EREQQRLERE RARQAVERAT
601: REARERAAAE ARQRAERAAV EKVNAEARGR AERAAVQRAQ AEARERAAAE AKERAEKAAA EAKERETRER ATAARAEAEA RVKAERASVE RAAAEARERA
701: AAAARMNQQK NENDLESFFG MGARASSVPR PPRANSSDNV FESQFQSDVT RKSTSASTSM KKASSSTNIV DDLSSIFGAA PTSGEFQEVE GETEERRRAR
801: LERHHRTKER AAKALAEKNQ RDLQTQREQA ERHRLAETLD FEIKRWAAGK EGNLRALLST LQYVLWPECG WQPVSLTDLI TAAAVKKAYR KATLCIHPDK
901: VQQKGANLQQ KYVAEKVFDL LKEAWNKFNS EELF

Best Arabidopsis Sequence Match ( AT4G12770.1 )
(BLAST)

001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F

Arabidopsis Description

Auxilin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQ57]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.