CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75100.1	KRG89812	AT2G41090.1	17360592
AT1G75100.1	KRG94975	AT2G41090.1	17360592
AT1G75100.1	KRH18664	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61195	Soybean	nucleus	78.33	89.1
KRG89681	Soybean	extracellular, golgi	6.53	55.95
VIT_18s0001g12100.t01	Wine grape	nucleus	38.75	36.42
PGSC0003DMT400071608	Potato	nucleus	32.08	33.09
Solyc04g080040.2.1	Tomato	nucleus	32.36	32.18
CDY45410	Canola	nucleus	25.42	30.81
CDX73142	Canola	nucleus	25.14	30.57
AT1G75100.1	Thale cress	nucleus	27.64	30.57
Bra015866.1-P	Field mustard	nucleus	26.67	30.09
EER95331	Sorghum	nucleus, plastid	23.61	28.86
GSMUA_Achr7P25970_001	Banana	nucleus	27.64	28.8
Os03t0198300-02	Rice	nucleus	23.89	28.34
PGSC0003DMT400071606	Potato	nucleus	21.81	27.89
Zm00001d048175_P002	Maize	nucleus	23.06	27.85
TraesCS4B01G261900.1	Wheat	nucleus, plastid	24.31	27.43
TraesCS4A01G041000.2	Wheat	nucleus, plastid	23.89	27.09
TraesCS4D01G261900.1	Wheat	nucleus, plastid	24.03	26.91
HORVU4Hr1G070720.5	Barley	mitochondrion	24.17	25.63
KRH37791	Soybean	nucleus	13.89	21.37
KRH12827	Soybean	nucleus	13.75	21.24
CDY59467	Canola	mitochondrion	27.22	19.82
KRH42596	Soybean	nucleus	12.64	19.12
KRH44795	Soybean	nucleus	11.94	18.98
KRH58698	Soybean	nucleus	12.22	18.92
KRH53284	Soybean	nucleus	12.36	17.25
KRH64620	Soybean	nucleus	12.08	16.83
KRH53945	Soybean	nucleus, plastid	16.39	12.8
KRH63993	Soybean	nucleus, plastid	15.69	12.39
KRH40961	Soybean	endoplasmic reticulum	15.83	12.21
KRH59609	Soybean	nucleus	15.56	11.39
KRH70946	Soybean	nucleus	16.25	8.82
KRH75084	Soybean	nucleus	15.97	8.59
KRH69887	Soybean	nucleus	15.14	7.57
KRH28713	Soybean	nucleus	14.58	7.56
KRH76753	Soybean	nucleus	14.72	7.55
KRH08235	Soybean	nucleus	4.17	3.74

Protein Annotations

EMBL:ACUP02003395	EnsemblPlants:KRH51877	EnsemblPlantsGene:GLYMA_06G033700	EntrezGene:100820241	Gene3D:1.10.287.110	GO:GO:0005575
GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf
PANTHER:PTHR23172	PANTHER:PTHR23172:SF55	ProteinID:KRH51877	ProteinID:KRH51877.1	SEG:seg	SUPFAM:SSF46565
UniParc:UPI000296C2C3	UniProt:I1K7T4	MapMan:22.1.6.4	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:2593715..2601131

Molecular Weight (calculated)

80065.2 Da

IEP (calculated)

6.556

GRAVY (calculated)

-0.758

Length

720 amino acids

Sequence
(BLAST)

001: MERFYSSQRE SLLLGYNNDY INSLIPRSSS SDSNSEVDFT DVFGGPPRRS SVNEARQTVG ELSEEEGERG WCRWPPEREK PVFGEDSGNR RRHPTNKNSD
101: FFDDIFGGEA SGSVCSTPKK RVGDAFALSR VSSPLPLPPA ADPVVGSLPA TFSLPAKLTN GVDLPTFGSS TRNRNLSNIN DGIVASNGLK PYRQSLLSQE
201: FSNSSTSDKA DKGSIMKQNI SISEGSPGAS NGQFHFSIYK WASKGVPMVM PLRTERNSRN KDKAKLERCS SAKEWIVSEI TTQNPIEYNG SPLMNNRKQD
301: VPTTSTPTEN GSDSNQIVEQ IVSAKTQSDK SSSPQTITKD VPTSSISHDA REVESSTRST GEIGFSGKTE AAKETQKREP KPLQFLFKES DKKQDNDETI
401: TREREENRMK SSKKLSAVFD VTVNPIKQEE KTVPLRDVGR SKAISQGSVS LGENMGKGLV KGKVKEFARI FNQEAVTKPK FDSNSRSQGS TYKKREALRA
501: KNEVEGGPEQ SKKYNSATET TNISANILSH EEDISEPEIP DISFTVIGDK DESFHGSFMI QVLAQDEDEV LQNQENQEIQ TIDNKIKQWS KGKEGNIRSL
601: LSTLQYFCSS YAFQVYDQSR DYGCIRQLGQ SAFSLRVSQL WDNIPALVSV LWPECGWKYV PLVDIIEGNA VKRSYQRALL CLHPDKLQQK GASSDQKYIA
701: EKVFDILQEA WTQFNLLGAL

Best Arabidopsis Sequence Match ( AT1G75100.1 )
(BLAST)

001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V

Arabidopsis Description

JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.