CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75100.1	EES01631	AT2G41090.1	17360592
AT1G75100.1	EES09201	AT2G41090.1	17360592
AT1G75100.1	EES16322	AT2G41090.1	17360592
AT1G75100.1	OQU78227	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048175_P002	Maize	nucleus	87.61	86.58
Os03t0198300-02	Rice	nucleus	67.23	65.24
TraesCS4B01G261900.1	Wheat	nucleus, plastid	66.38	61.29
TraesCS4A01G041000.2	Wheat	nucleus, plastid	65.36	60.63
TraesCS4D01G261900.1	Wheat	nucleus, plastid	65.87	60.34
HORVU4Hr1G070720.5	Barley	mitochondrion	64.18	55.67
GSMUA_Achr7P25970_001	Banana	nucleus	39.22	33.43
KRH61195	Soybean	nucleus	29.03	27.01
VIT_18s0001g12100.t01	Wine grape	nucleus	32.6	25.07
PGSC0003DMT400071608	Potato	nucleus	28.69	24.21
CDY45410	Canola	nucleus	24.28	24.07
CDX73142	Canola	nucleus	24.11	23.99
KRH51877	Soybean	nucleus	28.86	23.61
Bra015866.1-P	Field mustard	nucleus	25.3	23.35
Solyc04g080040.2.1	Tomato	nucleus	28.01	22.79
AT1G75100.1	Thale cress	nucleus	24.79	22.43
PGSC0003DMT400071606	Potato	nucleus	16.3	17.05
CDY59467	Canola	mitochondrion	22.92	13.65
EES17168	Sorghum	mitochondrion, nucleus	18.34	12.04
EES08933	Sorghum	nucleus, plastid	17.49	11.33
OQU86832	Sorghum	nucleus	16.98	10.43
EES18741	Sorghum	nucleus	18.85	7.62
EES03325	Sorghum	nucleus	17.83	6.96

Protein Annotations

EnsemblPlants:EER95331	EnsemblPlantsGene:SORBI_3001G468700	EntrezGene:8054247	Gene3D:1.10.287.110	GO:GO:0005575	GO:GO:0006810
GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR23172
PANTHER:PTHR23172:SF55	ProteinID:EER95331	ProteinID:EER95331.1	RefSeq:XP_002468333.1	SEG:seg	SUPFAM:SSF46565
unigene:Sbi.15422	UniParc:UPI0001A82D9F	UniProt:C5WTV9	MapMan:20.5.7	MapMan:22.1.6.4	:

Description

hypothetical protein

Coordinates

chr1:-:74150839..74157363

Molecular Weight (calculated)

64871.8 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.863

Length

589 amino acids

Sequence
(BLAST)

001: MAGAPPLRSD VDFADVFGGP PRRSSGNEHR SSSGSATRAR SGGSDTPVFG DRGSSDRRRH PGEEFYKDIF SGSEAASPRR GGAGDWGDVF GGPTSPVSTA
101: RPRSSFSMRV NRGTDVSVPS SPSRQISNRN DDGASYAYSV PTSPNASMNN YLAQGPAQQH SKKNPFSWHR HPFLSRFRSQ SGEKKSTSNY VSSMDSEYEG
201: TPANLESIMA NNKFHFSFYK WAGKGALLVL PATSQEKSED IIGLRSFPQV VVQGIDLIDY EDNMSTATGT SKSQTDYEDS KSGKHSTNSV TKDGAIPSLP
301: EDYMQGTKQS NDHTKNDVSS ASLSSKISRS PSERSRSSRV KEKMKGFIKL FSPESSPKRK RAPETQGQTS VGKNGSKTEL QDKFRLSSLE ANEDVETAKM
401: NSQNAFIAES SPMTEVQERM DKPVLSENSK MDTAMGSNEA ASNESIHDDT KDKADNTMQH EDIHIEDLDG CVVEHFSEDP VLHNDQEKEL IKASESKIRE
501: WSRGKEGNIR SLLSTLQYVL WPESGWKPVP LVDIIEGAAV KKAYQKALLC LHPDKLQQRG AAMHQKYIAE KVFDILQESW KEFNSITFG

Best Arabidopsis Sequence Match ( AT1G75100.1 )
(BLAST)

001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V

Arabidopsis Description

JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.