CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0188g00150.t01	Wine grape	cytosol	4.79	93.48
PGSC0003DMT400052312	Potato	cytosol	10.81	93.27
Zm00001d041647_P004	Maize	nucleus	89.41	90.72
Zm00001d023838_P014	Maize	mitochondrion, nucleus	88.29	87.71
VIT_10s0116g01370.t01	Wine grape	extracellular	7.36	78.57
Os12t0548200-02	Rice	plasma membrane	79.71	77.3
HORVU5Hr1G024350.1	Barley	plasma membrane	61.2	74.39
TraesCS5D01G104700.2	Wheat	nucleus	73.02	73.68
TraesCS5A01G092500.2	Wheat	nucleus	73.13	73.54
TraesCS5B01G098600.2	Wheat	nucleus	73.13	73.54
VIT_00s0188g00210.t01	Wine grape	plastid	10.93	60.49
EES08933	Sorghum	nucleus, plastid	56.74	56.0
GSMUA_Achr11P...	Banana	nucleus	55.96	54.09
KRH53945	Soybean	nucleus, plastid	52.51	51.08
KRH40961	Soybean	endoplasmic reticulum	52.29	50.21
KRH63993	Soybean	nucleus, plastid	50.39	49.56
Solyc09g018960.2.1	Tomato	nucleus	50.39	49.08
CDY31429	Canola	plastid	44.48	48.9
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	52.06	48.75
GSMUA_Achr3P24020_001	Banana	nucleus	43.14	48.5
AT4G12770.1	Thale cress	nucleus	47.83	48.15
Bra020913.1-P	Field mustard	nucleus	44.82	48.09
CDX76445	Canola	nucleus	44.7	48.08
AT4G12780.1	Thale cress	nucleus	48.16	47.79
KRH59609	Soybean	nucleus	52.29	47.71
Solyc06g082840.2.1	Tomato	nucleus	49.61	46.21
PGSC0003DMT400071173	Potato	nucleus	49.05	46.12
PGSC0003DMT400052311	Potato	nucleus	40.8	43.36
OQU86832	Sorghum	nucleus	41.92	39.21
EER95331	Sorghum	nucleus, plastid	12.04	18.34
EES18741	Sorghum	nucleus	29.21	17.99
EES03325	Sorghum	nucleus	28.54	16.98

Protein Annotations

EnsemblPlants:EES17168	EnsemblPlantsGene:SORBI_3008G123500	EntrezGene:8068810	Gene3D:1.10.287.110	GO:GO:0005575	GO:GO:0006810
GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil
PANTHER:PTHR23172	PANTHER:PTHR23172:SF53	ProteinID:EES17168	ProteinID:EES17168.1	RefSeq:XP_002443330.1	SEG:seg
SUPFAM:SSF46565	unigene:Sbi.8247	UniParc:UPI0001A88636	UniProt:C5YPK5	MapMan:22.1.6.4	:

Description

hypothetical protein

Coordinates

chr8:-:54638938..54646023

Molecular Weight (calculated)

99351.0 Da

IEP (calculated)

8.983

GRAVY (calculated)

-1.062

Length

897 amino acids

Sequence
(BLAST)

001: MDDFQGLLAR DFGLRPQGKA APMSAARSSG PSGSAWTNTR SAAGSASAAA APSYDDLFGS APPPPKATPS PSLDNIFDSF KDPAASTTAP PPPKPKHSSM
101: PVFDKPVYDD DIFVGVPGVK SSSARYDDVF GGSQSQSREA PPAFDDLLGG FGKSSQVREE VDDKRKQEAA TAAAAATGFD YLIPGFGGRS SPRQRDTSGA
201: KQKKVPVSTA KQTASLNDPF VVLETTSSSA HPFADPLDEF GKAAKYQGKS RESTSVESSL DSSTFNQAPK SEPFFTSEVD NGSKGRNESS RARDSNPVQS
301: FSKRNSAQQS SVQDFENIFP KSQSARYSDV HVDISSEKYS GNGINDQSPR SDESEDEIWL TASEIPLFTQ PTSAPPPSRP PPPLAVKQKH GSKSKRKDDE
401: YLRRSRKNND HQRGSSNQAG VSTVDELEDF AMGRSQNAHA FNEEEFERST AAAASAAAMK EAMDKAEAKF KHAKEVRERE RDAKLRNREQ QEQDTVTRSY
501: GQDREEKDRK ERLEQEREMR QKEEKEKEQR RLEEERELER HRERERARQA VERATKEARE RAAAEARAKA EREARQRSER AAVQRAQQEA RERAAVEAKE
601: RAERATAEAK ERAAAEAKEK AASQARDRAV AERAAVERAQ QEARKRAERA AVERAASEAR ERQAAAAAAA AAREKTSKPD DLDSFFGMGA RANSAPRQRA
701: PTVDSMFDSQ TQNRGTSTST SMKKASSTAN IADDLSAIFG GVPTSSDEFQ EVDGESEERR RARLERHQRT RERAAKALAE KNERDMQQQR EQAERHRLAE
801: TLDFEIKRWA AGKEGNLRAL LSTLQYVLWP ECGWQPVSLT DLITAAAVKK VYRKATLCIH PDKVQQKGAN LQQKYIAEKV FDLLKEAWNK FNSEELF

Best Arabidopsis Sequence Match ( AT4G12780.1 )
(BLAST)

001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFATAAGKK SDSLPVFDDP GRDGDDLLFK DVFSGPPPPK YGSSSGDSRS PSAPAFDYDA
101: MFKEPKSKSA SSMPVYDKPV YDDEDVFESI PELKIPSTSS QSARFENVFS SISSSPTKHR KQNSSPFDDL MGNNLGKKGA DSDREEKGSS IFDDLIPGFG
201: RTSSPPSKRT TSETTNQSEK APYRTAETSS NVEEDPFVVL EESESTPREP SRTDPLDDIG KFNSRKTDHS SVHGGVFVDI DPLDNLGKPG PDMNSKGKSH
301: LRPPGNISGS QSPPVESPGS YHSKKVSFED FLEPHNMSTP PPTNSNGSFE SSDDVWLTVS EIPLFTQPTS APPPTRPPPP RPTRPIKKKV NEPSIPTSAY
401: HSHVPSSGRA SVNSPTASQM DELDDFSIGR NQTAANGYPD PSSGEDSDVF STAAASAAAM KDAMDKAEAK FRHAKERREK ENLKASRSRE GDHTENYDSR
501: ERELREKQVR LDRERAEREA EMEKAQEREK EEREREQKRI ERERERLVAR QAVERATREA RERAATEAHA KVQRAAVGKA TDARERAERA AVQRAHAEAR
601: ERAAAGARDK AAKAAAEARE KAEKAAAEAK ERANAEAREK ETRVRAERAA VERAAAEARG RAAAQAKAKQ QQENTNDLDS FFSSISRPNS APRQRTNPLD
701: PFQDSWNKGG SFESSRESLR VPPGQPENLR KTSSVTNIVD DLSSIFGASA SQSGGFQDVD GETEERRRAR LERHQRTQER AAKALAEKNE RDLQVQREQV
801: EKDRIGVTLD VEIKRWGAGK EGNLRALLST LQYVLWPECG WQPVSLTDLI TAASVKKVYR KATLCIHPDK VQQKGANLQQ KYIAEKVFDM LKEAWNKFNS
901: EELF

Arabidopsis Description

AUXI1Auxilin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU08]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.