CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76445	Canola	nucleus	99.02	96.88
Bra020913.1-P	Field mustard	nucleus	98.53	96.17
PGSC0003DMT400052312	Potato	cytosol	11.64	91.35
AT4G12770.1	Thale cress	nucleus	83.58	76.54
AT4G12780.1	Thale cress	nucleus	82.6	74.56
VIT_00s0188g00210.t01	Wine grape	plastid	12.01	60.49
CDX88363	Canola	cytosol	15.69	53.56
GSMUA_Achr2P02260_001	Banana	nucleus	16.91	49.82
KRH53945	Soybean	nucleus, plastid	54.78	48.48
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	56.74	48.33
KRH40961	Soybean	endoplasmic reticulum	55.15	48.18
HORVU5Hr1G024350.1	Barley	plasma membrane	43.26	47.83
KRH63993	Soybean	nucleus, plastid	52.45	46.93
PGSC0003DMT400071173	Potato	nucleus	54.41	46.54
GSMUA_Achr11P...	Banana	nucleus	52.33	46.01
Solyc06g082840.2.1	Tomato	nucleus	54.17	45.9
KRH59609	Soybean	nucleus	55.15	45.78
Solyc09g018960.2.1	Tomato	nucleus	51.35	45.49
GSMUA_Achr3P24020_001	Banana	nucleus	44.49	45.49
CDX87523	Canola	cytosol	16.91	45.1
Os12t0548200-02	Rice	plasma membrane	50.61	44.65
Zm00001d041647_P004	Maize	nucleus	48.28	44.57
EES17168	Sorghum	mitochondrion, nucleus	48.9	44.48
GSMUA_Achr1P26650_001	Banana	nucleus	47.43	44.08
TraesCS5D01G104700.2	Wheat	nucleus	47.55	43.64
TraesCS5A01G092500.2	Wheat	nucleus	47.67	43.61
TraesCS5B01G098600.2	Wheat	nucleus	47.3	43.27
CDY04660	Canola	cytosol	24.88	42.38
PGSC0003DMT400052311	Potato	nucleus	43.75	42.3
Zm00001d023838_P014	Maize	mitochondrion, nucleus	46.57	42.08
TraesCS4D01G145200.4	Wheat	nucleus	43.26	40.07
CDY08188	Canola	nucleus	23.9	40.04
Os11t0661200-01	Rice	nucleus	43.38	39.86
EES08933	Sorghum	nucleus, plastid	44.24	39.71
Zm00001d007692_P003	Maize	plasma membrane	43.14	39.68
CDY01318	Canola	cytosol	24.63	39.11
CDY00396	Canola	nucleus	24.88	38.74
HORVU4Hr1G033280.4	Barley	nucleus	42.77	37.49
TraesCS4A01G169200.1	Wheat	nucleus	43.14	37.29
TraesCS4B01G126200.1	Wheat	nucleus	42.28	36.94
CDY26275	Canola	cytosol	11.03	20.79
CDX77599	Canola	nucleus	10.91	20.46
CDX90242	Canola	nucleus	10.42	20.33
CDY70725	Canola	nucleus	10.66	20.23
CDX98192	Canola	nucleus	10.54	19.95
CDY54130	Canola	cytosol	6.25	18.28
CDX75581	Canola	nucleus	26.35	17.9
CDX69230	Canola	nucleus	26.47	17.72
CDY21468	Canola	cytosol	6.99	16.67
CDX73162	Canola	nucleus	25.0	14.72
CDX73142	Canola	nucleus	10.66	14.7
CDY45410	Canola	nucleus	10.66	14.65
CDY45424	Canola	nucleus	25.0	14.21
CDY59467	Canola	mitochondrion	10.66	8.8

Protein Annotations

EnsemblPlants:CDY31429	EnsemblPlantsGene:GSBRNA2T00047659001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil
PANTHER:PTHR23172	PANTHER:PTHR23172:SF54	ProteinID:CDY31429	ProteinID:CDY31429.1	SEG:seg	SUPFAM:SSF46565
UniParc:UPI0004EE4A01	UniProt:A0A078H1W6	MapMan:22.1.6.4	:	:	:

Description

BnaC03g63950DBnaC03g63950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1W6]

Coordinates

chrLK032272:-:95281..98932

Molecular Weight (calculated)

90382.8 Da

IEP (calculated)

6.492

GRAVY (calculated)

-1.007

Length

816 amino acids

Sequence
(BLAST)

001: MDDFSGLLGL KPQGKSAPMA PSSSSPARNK SDSSPLFDDL SGGDDLLFSD SRSQTKPSDF DYDAMFKDPK PVYDKPVYDE EDVFESLKTP SGSQSARFDD
101: LFSSHSVHRK NNSSPFDDLI GNLSKPESER DEIGSSAFDD LIPGFGRASS PPAKRPTSET SHSQKPPYRT SSNLAEDPFV VLESASTPRD PLDDIGLFNS
201: RKTDHSFADI DPLDSLGKSG PDMSSRDKSH LRPGNGSGSQ SPVESSHAGS YHGKKVSFDE VLEPQSTSVP HATAPLYENK SLNSDGSFDL SDDVWLTVSE
301: IPLFTQPTSA PPPSRPPPPR PTRPMKKKAN EPHSHVRTSA RASVNSPTAS QMDDLDDFSM GKNHTAANGE DSDVYSTAVA SAAAMKDAMD KAEAKFRQAK
401: ERREKDNLKA SRSMEGDPVD NYDSRERELR EKQVRLDRER AEREAEMEKA QEREREERER KRVEKERERL LARQAVERAT REARERAASE AHAKAQRAAV
501: GKANTDARER AERAAVQRAH AEARERAAAG AREKAERAAA EARERELSVK AERAAVERAA AEARARATAE ARARVAAQAK AKQQENNNDL DSFFDSVSRP
601: SSAPRQRTNP LDPFQDTWNK GGSFESSRAS SRVPSGAAEN LRKTSSATNI VDDLSSIFGA SATQSGGFQD VEGETEERRR ARLERHQRTQ ERAAQALAEK
701: NDRDLRAQRE QAEKNRIGET LDVEIKRWGA GKEGNLRALL STLQYVLWPE CGWQPVSLTD LITAASVKKF YRKATLCIHP DKVQQKGANL QQKYIAEKVF
801: DMLKEAWNKF NSEELF

Best Arabidopsis Sequence Match ( AT4G12770.1 )
(BLAST)

001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F

Arabidopsis Description

Auxilin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQ57]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.