CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015674.1-P	Field mustard	cytosol	93.79	94.41
CDX88363	Canola	cytosol	66.99	85.77
KRG89681	Soybean	extracellular, golgi	17.65	64.29
PGSC0003DMT400030755	Potato	nucleus	31.05	48.97
CDY04660	Canola	cytosol	55.88	35.7
CDY01318	Canola	cytosol	57.19	34.05
CDY00396	Canola	nucleus	57.52	33.59
CDY08188	Canola	nucleus	52.61	33.06
VIT_18s0001g01980.t01	Wine grape	cytosol	45.75	27.13
KRH64620	Soybean	nucleus	44.44	26.31
KRH53284	Soybean	nucleus	44.12	26.16
Solyc06g060090.2.1	Tomato	nucleus	41.18	25.87
CDY31429	Canola	plastid	45.1	16.91
CDX76445	Canola	nucleus	45.1	16.55
Os01t0355500-02	Rice	nucleus	41.83	13.5
CDY54130	Canola	cytosol	12.09	13.26
CDX90242	Canola	nucleus	17.97	13.16
CDX77599	Canola	nucleus	18.63	13.1
CDX98192	Canola	nucleus	18.3	12.99
CDY70725	Canola	nucleus	17.97	12.79
CDY26275	Canola	cytosol	17.97	12.7
OQU86832	Sorghum	nucleus	39.54	12.62
CDX73142	Canola	nucleus	20.26	10.47
CDY45410	Canola	nucleus	20.26	10.44
Zm00001d040795_P002	Maize	cytosol	27.45	9.14
CDX75581	Canola	nucleus	33.33	8.49
CDX69230	Canola	nucleus	33.01	8.29
CDY21468	Canola	cytosol	8.82	7.89
CDY59467	Canola	mitochondrion	20.91	6.47
CDX73162	Canola	nucleus	29.09	6.42
CDY45424	Canola	nucleus	29.09	6.2

Protein Annotations

EnsemblPlants:CDX87523	EnsemblPlantsGene:GSBRNA2T00146515001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR23172
PANTHER:PTHR23172:SF51	ProteinID:CDX87523	ProteinID:CDX87523.1	SUPFAM:SSF46565	UniParc:UPI0004EE0404	MapMan:22.1.6.4

Description

BnaA07g33500D

Coordinates

chrLK031850:-:1029174..1030860

Molecular Weight (calculated)

34183.2 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.446

Length

306 amino acids

Sequence
(BLAST)

001: MDEFVALTAV YGLKPRGKSA PMAALKRSAF DRNSVKTSPF DSGDDDANAE LTLKDSKFDS LNPGGFDDFS VFDELIKLSS TNDSGKTKSC VLVVSVTCDD
101: DLIGFYELIP GFGGSGQPSN NEFQETEAVQ VNKQQFGLDD DLEALFISPV ASAQFLDDLS PLFGGKSDKR RLARWEREQI IKDRMEKAIA YMNNRDHQIQ
201: IEQEERSRIS ETLDAEIKLW AAGKEGNLRA LISSLHLVLW PGCGWEAVSL TDLITSAAVK KVYKKANLYV HPDKVHQKGT QQKYIAEKVF NILQEAWNKF
301: NKEELS

Best Arabidopsis Sequence Match ( AT1G21660.1 )
(BLAST)

001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS

Arabidopsis Description

At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.