CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87523	Canola	cytosol	85.77	66.99
KRG89681	Soybean	extracellular, golgi	21.34	60.71
PGSC0003DMT400030755	Potato	nucleus	37.66	46.39
CDY04660	Canola	cytosol	63.18	31.52
CDY01318	Canola	cytosol	65.27	30.35
CDY00396	Canola	nucleus	66.11	30.15
CDY08188	Canola	nucleus	60.25	29.57
VIT_18s0001g01980.t01	Wine grape	cytosol	54.39	25.19
KRH53284	Soybean	nucleus	51.46	23.84
Solyc06g060090.2.1	Tomato	nucleus	48.54	23.82
KRH64620	Soybean	nucleus	51.46	23.79
CDY31429	Canola	plastid	53.56	15.69
CDX76445	Canola	nucleus	53.56	15.35
CDY54130	Canola	cytosol	15.9	13.62
CDX90242	Canola	nucleus	23.43	13.4
CDX77599	Canola	nucleus	23.85	13.1
CDY70725	Canola	nucleus	23.43	13.02
CDX98192	Canola	nucleus	23.43	12.99
CDY26275	Canola	cytosol	23.43	12.93
Os01t0355500-02	Rice	nucleus	51.05	12.87
OQU86832	Sorghum	nucleus	48.54	12.1
CDX73142	Canola	nucleus	23.85	9.63
CDY45410	Canola	nucleus	23.85	9.6
CDY21468	Canola	cytosol	12.13	8.48
Zm00001d040795_P002	Maize	cytosol	31.8	8.27
CDX75581	Canola	nucleus	38.91	7.74
CDX69230	Canola	nucleus	38.91	7.63
CDX73162	Canola	nucleus	35.98	6.2
CDY59467	Canola	mitochondrion	24.69	5.97
CDY45424	Canola	nucleus	35.56	5.92

Protein Annotations

EnsemblPlants:CDX88363	EnsemblPlantsGene:GSBRNA2T00147886001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR23172
PANTHER:PTHR23172:SF51	ProteinID:CDX88363	ProteinID:CDX88363.1	SEG:seg	SUPFAM:SSF46565	UniParc:UPI0004EEFD6C
MapMan:22.1.6.4	:	:	:	:	:

Description

BnaC06g38070D

Coordinates

chrLK031855:+:574855..576218

Molecular Weight (calculated)

26983.7 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.605

Length

239 amino acids

Sequence
(BLAST)

001: MDEFVALTAL YGLKPRGKSA PMAAVGFDDF SVFDELIKLS STNDSGDNDL LGGLTGLSPN EDGFDELIPG FGGSGQPSNN EFGVDDDLDS LFNPVELPRE
101: SDKRRLARWE REQIIKDRME KAIADMNNRD HQIQTEQEER SRISETLDGE IKLWATGKEG NLRALISSLH LVLWPGCRWE AVSLTDFTYA SVKKVYKKAN
201: LYVHPDKVHQ KGAQQKYIAE KVFNILQEAW NKFNKEELS

Best Arabidopsis Sequence Match ( AT1G21660.1 )
(BLAST)

001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS

Arabidopsis Description

At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.