Factsheet for VIT_18s0001g01980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0188g00150.t01	Wine grape	cytosol	7.17	80.43
VIT_10s0116g01370.t01	Wine grape	extracellular	10.85	66.67
KRG89681	Soybean	extracellular, golgi	10.85	66.67
PGSC0003DMT400030755	Potato	nucleus	23.84	63.4
CDX88363	Canola	cytosol	25.19	54.39
VIT_00s0188g00210.t01	Wine grape	plastid	16.09	51.23
Bra015674.1-P	Field mustard	cytosol	27.52	46.71
CDX87523	Canola	cytosol	27.13	45.75
CDY04660	Canola	cytosol	38.57	41.54
KRH53284	Soybean	nucleus	40.31	40.31
KRH64620	Soybean	nucleus	40.12	40.04
Solyc06g060090.2.1	Tomato	nucleus	37.6	39.84
AT1G21660.1	Thale cress	nucleus	39.92	39.39
CDY01318	Canola	cytosol	38.57	38.72
CDY08188	Canola	nucleus	36.43	38.6
Bra017937.1-P	Field mustard	nucleus	36.43	38.6
Bra012290.1-P	Field mustard	cytosol	38.37	38.45
CDY00396	Canola	nucleus	38.57	37.98
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	47.67	25.68
Os01t0355500-02	Rice	nucleus	37.02	20.15
OQU86832	Sorghum	nucleus	37.02	19.92
VIT_10s0003g04050.t01	Wine grape	nucleus	16.47	17.49
Zm00001d040795_P002	Maize	cytosol	28.88	16.21
VIT_18s0001g12100.t01	Wine grape	nucleus	18.99	12.79
VIT_04s0023g02070.t01	Wine grape	nucleus	26.55	9.42
VIT_18s0001g12770.t01	Wine grape	nucleus	24.42	9.33

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100257523	wikigene:100257523	EntrezGene:100853821	MapMan:22.1.6.4	ProteinID:CCB45461
ProteinID:CCB45461.1	ncoils:Coil	UniProt:F6H0I9	EMBL:FN595227	GO:GO:0005575	GO:GO:0006810
GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100257523
wikigene:LOC100257523	PANTHER:PTHR23172	PANTHER:PTHR23172:SF54	SUPFAM:SSF46565	UniParc:UPI0002109D2F	ArrayExpress:VIT_18s0001g01980
EnsemblPlantsGene:VIT_18s0001g01980	EnsemblPlants:VIT_18s0001g01980.t01	RefSeq:XP_002285880	RefSeq:XP_002285880.1	RefSeq:XP_010664177.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:2418945..2426660

Molecular Weight (calculated)

55570.6 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.686

Length

516 amino acids

Sequence
(BLAST)

001: MDEFGRLTQS FGLKPQGKSA PMAALKRPST TGNDGAFNFD VGSGVHSNGG SGVSQNFGGL DDYDDIFGGR NRNSNTWGGG GGGGSLLDHD SVFGNLNSSG
101: ANRGGSNYDG DFFGGISEVK SSGTVNYNDV FGFTDSGSKQ SDQFDDFLGN SGGVEKNAPR GFDDLIPGFG GSGAAKKGMN SETNKLNQSA VGSTKSTSTL
201: AEDPFVLFES TSTPADTSSP VFSDPLEEMS KISNSRKGSS FSSGAFDDMD LLNGFAKSMP TMSSNKSYSG QNGSSLIDEP AEQQSDLEFF FCKVAPPSSV
301: PRREATSAFH DRGVPEMVRK TFSGTSTTVD TVDKAFSGTS NSVDKVSSAT NVFDDFWNFG AAPSPGEFQE VEGESEERRR ARFQSHQRTQ ERMAKALAEK
401: NRYDLQTQQE QEERHRIAES LDTKIKHWAA GKEGNLRALL SSLQYVLGPE CGWQPVSLTD LITSDSVRKV YRKATLCIHP DKIQQKGASV QQKYIAEKVF
501: DVLKEAWNKC KTEEGL

Best Arabidopsis Sequence Match ( AT1G21660.1 )
(BLAST)

001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS

Arabidopsis Description

At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.