Factsheet for VIT_10s0003g04050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12827	Soybean	nucleus	60.08	62.66
KRH37791	Soybean	nucleus	59.26	61.54
KRH58698	Soybean	nucleus	56.38	58.92
KRH44795	Soybean	nucleus	54.53	58.5
KRH42596	Soybean	nucleus	55.14	56.3
VIT_00s0188g00150.t01	Wine grape	cytosol	5.14	54.35
Bra014876.1-P	Field mustard	nucleus	41.36	46.31
CDX77599	Canola	nucleus	41.36	46.21
Bra010780.1-P	Field mustard	nucleus	39.3	45.69
CDX90242	Canola	nucleus	39.3	45.69
CDX98192	Canola	nucleus	40.12	45.24
CDY26275	Canola	cytosol	39.3	44.11
Bra032375.1-P	Field mustard	cytosol	39.3	44.11
CDY70725	Canola	nucleus	38.68	43.72
AT1G30280.1	Thale cress	cytosol	40.74	43.52
CDY54130	Canola	cytosol	24.28	42.29
VIT_10s0116g01370.t01	Wine grape	extracellular	7.2	41.67
CDY21468	Canola	cytosol	27.57	39.18
VIT_18s0001g01980.t01	Wine grape	cytosol	17.49	16.47
VIT_18s0001g12100.t01	Wine grape	nucleus	22.43	14.23
VIT_00s0188g00210.t01	Wine grape	plastid	4.32	12.96
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	23.46	11.9
VIT_18s0001g12770.t01	Wine grape	nucleus	26.34	9.47
VIT_04s0023g02070.t01	Wine grape	nucleus	26.75	8.93

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100249766	wikigene:100249766	MapMan:22.1.6.4	EMBL:AM441562	ProteinID:CAN80626
ProteinID:CAN80626.1	ProteinID:CBI30944	ProteinID:CBI30944.3	UniProt:D7TKC2	InterPro:DnaJ_domain	EMBL:FN595992
GO:GO:0005575	GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100249766	wikigene:LOC100249766	PANTHER:PTHR23172	PANTHER:PTHR23172:SF39
SUPFAM:SSF46565	UniParc:UPI00019842ED	ArrayExpress:VIT_10s0003g04050	EnsemblPlantsGene:VIT_10s0003g04050	EnsemblPlants:VIT_10s0003g04050.t01	unigene:Vvi.15380
unigene:Vvi.21844	RefSeq:XP_002272106	RefSeq:XP_002272106.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:6870591..6874025

Molecular Weight (calculated)

55165.2 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.785

Length

486 amino acids

Sequence
(BLAST)

001: MDESWRMRMG MHNLPRRKST EETSSQRSRK TFSGESRTMH PEDFSDVFGG PPRSVLSRQY SGDFTARAQS NSFYEEIFRP ADLGAPARSG RVLPVFRIPG
101: NRKGGGGFYS DIFGSDDDRR SRTRSKPNSK SKSKSNSSSV LSSEELSPLR PVIGDDVALS SFASKLRPIN VPSRWSSSMM MPEEYSRKQG MPAFPCNPSP
201: CIENHFMKTE YDDDSSSIFG FSQRVSFPET ISVEPNSYGS IKVSIDDLEL NSPSSAVSSV CQAPDAKPRI PDDELLQGQE TEQEDDDEVM SSYVIEITPD
301: RREGTDEADA LDEAIAWAKE KFQTHSSEKE WSIRPQETEH FVEMEDRPNS REFRVPQMDE HGMMQSPVKD KWATEDKQQM EKDMEIELLD EDVRLWSSGK
401: EANIRLLLST LHHILWPNSG WYAIPLTSLI ETSQVKKAYQ KARLCLHPDK LQQRGVTPPQ KYVAEKAFSI LQDAWAAFIS QDVFFS

Best Arabidopsis Sequence Match ( AT1G30280.1 )
(BLAST)

001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C752]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.