CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58698	Soybean	nucleus	94.04	91.61
KRH42596	Soybean	nucleus	96.03	91.39
KRH12827	Soybean	nucleus	74.61	72.53
KRH37791	Soybean	nucleus	73.51	71.15
VIT_10s0003g04050.t01	Wine grape	nucleus	58.5	54.53
KRG89681	Soybean	extracellular, golgi	8.17	44.05
Bra010780.1-P	Field mustard	nucleus	38.63	41.87
CDX90242	Canola	nucleus	38.41	41.63
Bra014876.1-P	Field mustard	nucleus	38.63	40.32
CDY70725	Canola	nucleus	38.19	40.23
CDX77599	Canola	nucleus	38.63	40.23
CDY26275	Canola	cytosol	37.97	39.72
Bra032375.1-P	Field mustard	cytosol	37.97	39.72
CDX98192	Canola	nucleus	37.09	38.98
AT1G30280.1	Thale cress	cytosol	38.63	38.46
CDY21468	Canola	cytosol	27.59	36.55
CDY54130	Canola	cytosol	21.63	35.13
KRH53284	Soybean	nucleus	16.34	14.34
KRH64620	Soybean	nucleus	16.11	14.12
KRH61195	Soybean	nucleus	18.32	13.11
KRH51877	Soybean	nucleus	18.98	11.94
KRH53945	Soybean	nucleus, plastid	23.84	11.71
KRH40961	Soybean	endoplasmic reticulum	22.3	10.81
KRH63993	Soybean	nucleus, plastid	21.63	10.75
KRH59609	Soybean	nucleus	22.3	10.27
KRH75084	Soybean	nucleus	22.74	7.7
KRH69887	Soybean	nucleus	24.28	7.64
KRH70946	Soybean	nucleus	21.85	7.47
KRH76753	Soybean	nucleus	22.96	7.41
KRH28713	Soybean	nucleus	22.3	7.28
KRH08235	Soybean	nucleus	8.83	4.99

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100797148	MapMan:22.1.6.4	EMBL:ACUP02004958	InterPro:DnaJ_domain	EnsemblPlantsGene:GLYMA_08G231500
GO:GO:0005575	GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	UniProt:I1KW13
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH44795	ProteinID:KRH44795	ProteinID:KRH44795.1
PANTHER:PTHR23172	PANTHER:PTHR23172:SF39	SUPFAM:SSF46565	UniParc:UPI00023C6926	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:18998534..19001604

Molecular Weight (calculated)

51368.2 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.772

Length

453 amino acids

Sequence
(BLAST)

001: MRGFPRRRSV ENRSSSRRRP SIFYGAGNSE SMDADDFADV FGGPPRTLLA HKFSSSGSFY EEVFRPPEFT FPAPKDGRSL PVFRIPARNE GFYSDIFRSD
101: DDRRSRERSR SLSKENSSSA MSSEELSPRR PAIGDDVALS GFASKLRPIN IPWRWNPSTV MPEAEEYTSK LGVPLFACKD QSFEIQHQDN EYKENFRSPH
201: LGSSRRASSP ETISLESNSY QSTKVFTDDW ELNSPFSVVS SLYQEPEAKF SVHDRVLSDQ IIEDDDDDDD DDIMSSYVIE LNSNLRREEC GESAIDEAIA
301: WAKEKFQSQS SDEESSIRND GKEQTVGIGG SDASEYHDNG IGIVQTQEKQ QTETEKLDRD IRLWSSGKET DIRLLLSTLH HILRPESGWY AIPPKSLLES
401: SQVKKAYQKA RLCLHPDKLQ QRGATLLQKY VAEKAFSILQ DAWAAFISID VSF

Best Arabidopsis Sequence Match ( AT1G30280.1 )
(BLAST)

001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C752]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.