CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75100.1	KRG89812	AT2G41090.1	17360592
AT1G75100.1	KRG94975	AT2G41090.1	17360592
AT1G75100.1	KRH18664	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51877	Soybean	nucleus	89.1	78.33
KRG89681	Soybean	extracellular, golgi	7.58	57.14
VIT_18s0001g12100.t01	Wine grape	nucleus	42.97	35.51
PGSC0003DMT400071608	Potato	nucleus	36.81	33.38
Solyc04g080040.2.1	Tomato	nucleus	36.49	31.91
CDY45410	Canola	nucleus	29.54	31.48
CDX73142	Canola	nucleus	28.91	30.91
AT1G75100.1	Thale cress	nucleus	31.6	30.72
Bra015866.1-P	Field mustard	nucleus	30.96	30.72
EER95331	Sorghum	nucleus, plastid	27.01	29.03
Os03t0198300-02	Rice	nucleus	27.65	28.83
Zm00001d048175_P002	Maize	nucleus	27.01	28.69
PGSC0003DMT400071606	Potato	nucleus	25.28	28.42
GSMUA_Achr7P25970_001	Banana	nucleus	30.33	27.79
TraesCS4A01G041000.2	Wheat	nucleus, plastid	27.49	27.4
TraesCS4B01G261900.1	Wheat	nucleus, plastid	27.49	27.27
TraesCS4D01G261900.1	Wheat	nucleus, plastid	27.33	26.91
HORVU4Hr1G070720.5	Barley	mitochondrion	27.65	25.77
KRH37791	Soybean	nucleus	15.32	20.73
KRH12827	Soybean	nucleus	15.17	20.6
CDY59467	Canola	mitochondrion	31.12	19.92
KRH42596	Soybean	nucleus	13.9	18.49
KRH44795	Soybean	nucleus	13.11	18.32
KRH58698	Soybean	nucleus	13.43	18.28
KRH53284	Soybean	nucleus	13.9	17.05
KRH64620	Soybean	nucleus	13.27	16.25
KRH53945	Soybean	nucleus, plastid	17.85	12.26
KRH63993	Soybean	nucleus, plastid	16.9	11.73
KRH40961	Soybean	endoplasmic reticulum	17.22	11.67
KRH59609	Soybean	nucleus	16.9	10.88
KRH70946	Soybean	nucleus	17.06	8.14
KRH75084	Soybean	nucleus	17.06	8.07
KRH28713	Soybean	nucleus	16.11	7.35
KRH69887	Soybean	nucleus	16.59	7.29
KRH76753	Soybean	nucleus	16.11	7.26
KRH08235	Soybean	nucleus	4.42	3.49

Protein Annotations

EMBL:ACUP02002158	EnsemblPlants:KRH61195	EnsemblPlantsGene:GLYMA_04G033500	EntrezGene:100820002	Gene3D:1.10.287.110	GO:GO:0005575
GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf
PANTHER:PTHR23172	PANTHER:PTHR23172:SF55	ProteinID:KRH61195	ProteinID:KRH61195.1	SEG:seg	SUPFAM:SSF46565
UniParc:UPI0001BA9081	UniProt:K7KHW0	MapMan:20.5.7	MapMan:22.1.6.4	:	:

Description

hypothetical protein

Coordinates

chr4:+:2663563..2671854

Molecular Weight (calculated)

70809.0 Da

IEP (calculated)

7.409

GRAVY (calculated)

-0.757

Length

633 amino acids

Sequence
(BLAST)

001: MERFYSSQRE SILLGYSNDN NNSLIQGSNL EVDFTDVFGG PPRRSSVNEV RQSVGEFSEE ERGWCRWPPE REKPVFGEDS GNRRRNHSDF FDDIFGGEES
101: ASVCSTPKKR VGDAFALSRV SSPLPPAADP VFGSLPATFS LPAKLTNGAD LPTFGSPTRS RNLLNNINDG IVASNGLKPY RQSLLSQEFS NSSTFDKTDK
201: GSIMKQDISI SEVLPSASNG QFHFSIYKWA SKGVPMVMPL RTERNSRNKD KAKLERCSGA KEWIVSEITT QNPIEYNRKQ DSNQIVEQIV SAKTQLDTST
301: SPQTVSKDVP ASSISRDTRE VESSIRSTSD KKLEPKPLQF LFKESDKKQD NDEMITRERE ENRMMKSTKK SSAVFDVTVN PMKQEEKAVP LRDVGRSKAT
401: SQGSVSLGEN LGKGLVKGKV KEFARIFNQE AVNKPKVDSK SQPQGSTYKK RDALRTKNEV EAGPEQPKKD NSVTETTNIS ANNLFHQDDI SEPEIPDISF
501: TVIGDKDESF PGSFMIQVLA QDEGEVLQTQ KNQEIQTIDN KIKQWSKGKE GNIRSLLSTL QYVLWPECGW KPVPLVDIIE GNAVKRSYQR ALLCLHPDKL
601: QQKGASSDQK YIAEKVFDIL QEAWTQFNML GAL

Best Arabidopsis Sequence Match ( AT1G75100.1 )
(BLAST)

001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V

Arabidopsis Description

JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.