Factsheet for VIT_18s0001g12100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75100.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT1G75100.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0188g00150.t01	Wine grape	cytosol	3.79	63.04
VIT_10s0116g01370.t01	Wine grape	extracellular	5.35	48.81
KRH61195	Soybean	nucleus	35.51	42.97
KRH51877	Soybean	nucleus	36.42	38.75
PGSC0003DMT400071608	Potato	nucleus	33.55	36.82
Solyc04g080040.2.1	Tomato	nucleus	33.55	35.5
AT1G75100.1	Thale cress	nucleus	28.59	33.64
CDY45410	Canola	nucleus	25.85	33.33
CDX73142	Canola	nucleus	25.72	33.28
GSMUA_Achr7P25970_001	Banana	nucleus	29.63	32.85
Bra015866.1-P	Field mustard	nucleus	27.15	32.6
EER95331	Sorghum	nucleus, plastid	25.07	32.6
Os03t0198300-02	Rice	nucleus	25.72	32.45
Zm00001d048175_P002	Maize	nucleus	24.93	32.05
PGSC0003DMT400071606	Potato	nucleus	23.11	31.44
TraesCS4B01G261900.1	Wheat	nucleus, plastid	25.72	30.88
TraesCS4A01G041000.2	Wheat	nucleus, plastid	25.07	30.24
TraesCS4D01G261900.1	Wheat	nucleus, plastid	24.8	29.55
HORVU4Hr1G070720.5	Barley	mitochondrion	24.8	27.98
VIT_10s0003g04050.t01	Wine grape	nucleus	14.23	22.43
CDY59467	Canola	mitochondrion	27.68	21.44
VIT_18s0001g01980.t01	Wine grape	cytosol	12.79	18.99
VIT_00s0188g00210.t01	Wine grape	plastid	3.66	17.28
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	16.97	13.57
VIT_04s0023g02070.t01	Wine grape	nucleus	17.36	9.14
VIT_18s0001g12770.t01	Wine grape	nucleus	15.67	8.88

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100264365	wikigene:100264365	MapMan:20.5.7	MapMan:22.1.6.4	ProteinID:CBI19658
ProteinID:CBI19658.3	UniProt:E0CQ12	EMBL:FN595227	GO:GO:0005575	GO:GO:0006810	GO:GO:0006898
GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100264365	wikigene:LOC100264365
PANTHER:PTHR23172	PANTHER:PTHR23172:SF55	SUPFAM:SSF46565	TIGR:TC60385	UniParc:UPI0001985334	ArrayExpress:VIT_18s0001g12100
EnsemblPlantsGene:VIT_18s0001g12100	EnsemblPlants:VIT_18s0001g12100.t01	unigene:Vvi.277	RefSeq:XP_002281702	RefSeq:XP_002281702.1	SEG:seg

Description

No Description!

Coordinates

chr18:-:10298381..10306686

Molecular Weight (calculated)

84847.6 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.828

Length

766 amino acids

Sequence
(BLAST)

001: MIGSVLISME RCCHKENTVL GCRHQRSLVT SVSSPKTPLR HSDVDFHDVF GGPPRRLSNQ VTRYSFGEGT EPSALRGGED GVSVCNPWTG LSEKPVFGED
101: GGNRRRYHSE DFFDDIFRGD NSVNTSPRGH DLDPFSSSPG SRVLSPAQPL PPPQAEIFGS SSNPAQLSTS LPSKVTRAMD FHSLREPGAS NGSSYPYSPP
201: SRFSNQTIQG QDGLKNDPWP SYRQSRLSHE FSLAGDESPK LTTSNRADMG DNLENGSNSS KVEINTSQSH FSLYKWASKG VPFVTPLRRL NSSRTKVKSK
301: TERCSSTNGR FQSERMVSEL PEAIMHDVEY HYTDDTSAST KSFKIDREKQ KNDALFTKIT QDRLEECQIV EEVVLAIPNL EPLNKTHNRI EDDAVLSNTR
401: KEGKPYSLSE TGLCGKAEKE ISVLAHEVSN PELKSLRSLL HETDDGQGTD KVTGKDGGKE SMLKTTKKSS VDVVPENAKE QERKGIASDS ALVDKASSQC
501: SPRNSGDSLG RNGVKGKVRE FVKKLNQEAS SKPITNSEPS DPRSQSSRRK NAGSFRAEKG AHVSATETDE QMHMDNANRK KMVPDASIMV DENPKQQQRR
601: YSGLKTAIHK SSGTTYVQKD SLASVSIPDD SVAALRDRQD SFQGNFVIEE LSQEQSKQPQ IDEDHDEIQV SDAKIRQWLS GKEGNIRSLL STLQYVLWPE
701: SGWKPVPLVD IIEGNAVKRA YQKALLCLHP DKLQQKGAAV HQKYIAEKVF DSLQEAWTHF NSLGSF

Best Arabidopsis Sequence Match ( AT1G75100.1 )
(BLAST)

001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V

Arabidopsis Description

JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.