Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45410 | Canola | nucleus | 89.7 | 89.39 |
| AT1G75100.1 | Thale cress | nucleus | 70.78 | 64.36 |
| CDY59467 | Canola | mitochondrion | 62.5 | 37.41 |
| KRH61195 | Soybean | nucleus | 30.91 | 28.91 |
| PGSC0003DMT400071608 | Potato | nucleus | 31.76 | 26.93 |
| Os03t0198300-02 | Rice | nucleus | 27.03 | 26.36 |
| VIT_18s0001g12100.t01 | Wine grape | nucleus | 33.28 | 25.72 |
| Solyc04g080040.2.1 | Tomato | nucleus | 31.25 | 25.55 |
| KRH51877 | Soybean | nucleus | 30.57 | 25.14 |
| GSMUA_Achr7P25970_001 | Banana | nucleus | 28.89 | 24.75 |
| TraesCS4B01G261900.1 | Wheat | nucleus, plastid | 26.01 | 24.14 |
| EER95331 | Sorghum | nucleus, plastid | 23.99 | 24.11 |
| TraesCS4A01G041000.2 | Wheat | nucleus, plastid | 25.84 | 24.09 |
| TraesCS4D01G261900.1 | Wheat | nucleus, plastid | 26.01 | 23.95 |
| CDX88363 | Canola | cytosol | 9.63 | 23.85 |
| Zm00001d048175_P002 | Maize | nucleus | 23.99 | 23.83 |
| HORVU4Hr1G070720.5 | Barley | mitochondrion | 25.34 | 22.09 |
| PGSC0003DMT400071606 | Potato | nucleus | 19.59 | 20.6 |
| CDX87523 | Canola | cytosol | 10.47 | 20.26 |
| CDX77599 | Canola | nucleus | 12.84 | 17.47 |
| CDX90242 | Canola | nucleus | 12.33 | 17.46 |
| CDX98192 | Canola | nucleus | 12.67 | 17.4 |
| CDY70725 | Canola | nucleus | 12.5 | 17.21 |
| CDY26275 | Canola | cytosol | 12.33 | 16.86 |
| CDY54130 | Canola | cytosol | 7.77 | 16.49 |
| CDY04660 | Canola | cytosol | 11.82 | 14.61 |
| CDY00396 | Canola | nucleus | 12.16 | 13.74 |
| CDY01318 | Canola | cytosol | 11.82 | 13.62 |
| CDY08188 | Canola | nucleus | 11.15 | 13.55 |
| CDY21468 | Canola | cytosol | 7.43 | 12.87 |
| CDX76445 | Canola | nucleus | 15.03 | 10.67 |
| CDY31429 | Canola | plastid | 14.7 | 10.66 |
| CDX69230 | Canola | nucleus | 14.36 | 6.97 |
| CDX75581 | Canola | nucleus | 14.02 | 6.91 |
| CDX73162 | Canola | nucleus | 15.2 | 6.49 |
| CDY45424 | Canola | nucleus | 15.71 | 6.48 |
Protein Annotations
| EnsemblPlants:CDX73142 | EnsemblPlantsGene:GSBRNA2T00103618001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | ncoils:Coil | PANTHER:PTHR23172 | PANTHER:PTHR23172:SF55 | ProteinID:CDX73142 | ProteinID:CDX73142.1 |
| SEG:seg | SUPFAM:SSF46565 | UniParc:UPI0004EE8B62 | MapMan:20.5.7 | MapMan:22.1.6.4 | : |
Description
BnaC06g35900D
Coordinates
chrLK031797:-:2281905..2284828
Molecular Weight (calculated)
65126.2 Da
IEP (calculated)
9.647
GRAVY (calculated)
-0.829
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTLPNSPPL LRRPGGDDDV DIDFRDVFGG PPKRRSKVVE TTGRHSFSEI RRRDVIVDNS ALILRDEMPV FGEDPSSIRL NESSSSSSPQ RKIKNEQETF
101: GSSLPGSRIL SPARPIPHKV ESPPGTSFPA QFSLPAKLIK GTEMPTFGSA ARSLSRNKEA ASSSPLSRTS SKADDMVGST ASDGYVAPKV VNGKVRQFHF
201: SIYKWPNKGV PVAMWGSSRL SSMAKAEETT PSDSVEKAQR DIEAEGETSQ KRPGVQKEEE MSEQAFSSNV SKAAPEVNVK PLHSFIDDKE ERRGEDIVLD
301: KEAKRKHKAR DSRSKKKPQG SRSSVDSPMP DNTSSYTSAS SAPKVGKDGA KGKVMDFVKI FSQGATVGAG GESLGQSSRW RAKEVPVTDI NKDGAKAKET
401: AKVPDQQKKS TPVTPATDQD QKPSQATHRK VPDKVSEKSN KPSGVTEQEE RQEPSTAHVT SEDIDEPFHV NFLVEDITQD ENKIEETRND AVEFQNIDAK
501: IRKWSSGKSG NIRSLLSTLQ YILWPGCGWK AVPLMDMIEG NAVRKSYQRA LLILHPDKLQ QKGASANQKY MAEKVFELLQ EAWDHFNTLG PV
101: GSSLPGSRIL SPARPIPHKV ESPPGTSFPA QFSLPAKLIK GTEMPTFGSA ARSLSRNKEA ASSSPLSRTS SKADDMVGST ASDGYVAPKV VNGKVRQFHF
201: SIYKWPNKGV PVAMWGSSRL SSMAKAEETT PSDSVEKAQR DIEAEGETSQ KRPGVQKEEE MSEQAFSSNV SKAAPEVNVK PLHSFIDDKE ERRGEDIVLD
301: KEAKRKHKAR DSRSKKKPQG SRSSVDSPMP DNTSSYTSAS SAPKVGKDGA KGKVMDFVKI FSQGATVGAG GESLGQSSRW RAKEVPVTDI NKDGAKAKET
401: AKVPDQQKKS TPVTPATDQD QKPSQATHRK VPDKVSEKSN KPSGVTEQEE RQEPSTAHVT SEDIDEPFHV NFLVEDITQD ENKIEETRND AVEFQNIDAK
501: IRKWSSGKSG NIRSLLSTLQ YILWPGCGWK AVPLMDMIEG NAVRKSYQRA LLILHPDKLQ QKGASANQKY MAEKVFELLQ EAWDHFNTLG PV
001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
Arabidopsis Description
JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.