CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21468	Canola	cytosol	77.06	62.87
Bra032375.1-P	Field mustard	cytosol	86.74	55.89
CDY26275	Canola	cytosol	86.74	55.89
CDX77599	Canola	nucleus	78.85	50.57
CDX90242	Canola	nucleus	73.84	49.28
CDX98192	Canola	nucleus	74.91	48.49
AT1G30280.1	Thale cress	cytosol	78.85	48.35
CDY70725	Canola	nucleus	73.48	47.67
KRH37791	Soybean	nucleus	43.01	25.64
KRH12827	Soybean	nucleus	41.94	25.11
VIT_10s0003g04050.t01	Wine grape	nucleus	42.29	24.28
KRH58698	Soybean	nucleus	39.07	23.44
KRH42596	Soybean	nucleus	37.63	22.06
KRH44795	Soybean	nucleus	35.13	21.63
CDX88363	Canola	cytosol	13.62	15.9
CDX87523	Canola	cytosol	13.26	12.09
CDY04660	Canola	cytosol	16.85	9.81
CDY08188	Canola	nucleus	16.85	9.65
CDY00396	Canola	nucleus	16.49	8.78
CDY01318	Canola	cytosol	15.05	8.17
CDY45410	Canola	nucleus	17.2	8.08
CDX73142	Canola	nucleus	16.49	7.77
CDY31429	Canola	plastid	18.28	6.25
CDX76445	Canola	nucleus	18.64	6.24
CDY59467	Canola	mitochondrion	19.71	5.56
CDX75581	Canola	nucleus	21.51	5.0
CDX69230	Canola	nucleus	21.15	4.84
CDX73162	Canola	nucleus	19.71	3.97
CDY45424	Canola	nucleus	19.71	3.83

Protein Annotations

EnsemblPlants:CDY54130	EnsemblPlantsGene:GSBRNA2T00013417001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil
PANTHER:PTHR23172	PANTHER:PTHR23172:SF39	ProteinID:CDY54130	ProteinID:CDY54130.1	SEG:seg	SUPFAM:SSF46565
UniParc:UPI0004EF27A5	UniProt:A0A078ISN4	MapMan:22.1.6.4	:	:	:

Description

BnaCnng26180DBnaCnng26180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISN4]

Coordinates

chrLK033281:+:66968..68132

Molecular Weight (calculated)

31075.0 Da

IEP (calculated)

4.477

GRAVY (calculated)

-0.588

Length

279 amino acids

Sequence
(BLAST)

001: MDESWRMKMG LNVDPFFSIA PRSMDVRIDA QDFSDVFGGP PRSVLTRKFS GDFSRSDCFY DEIFRPAGMF SCGTVSSSKS HGRNLTAFRI PSGGDGFYDG
101: VFGGCSGTAK QSPIAKSSKA EDEDEEEMSS YVIEVNSDRF DRYRDGGSGG GNSDSNDMDE AIAWARERSQ RPETKQAQED LIDSRRSEEE EAKSEEEMEM
201: EMKDEEIRIW LTGKETNIGL LLSTLHHVLW SNSIWQAIPL ANLRDGSQVK SVASRVFSIL QVLKPSLIQP VSFGSCSGY

Best Arabidopsis Sequence Match ( AT1G30280.1 )
(BLAST)

001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C752]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.