CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77599	Canola	nucleus	94.66	93.79
Bra014876.1-P	Field mustard	nucleus	94.43	93.78
CDX90242	Canola	nucleus	81.67	84.21
CDY70725	Canola	nucleus	82.37	82.56
CDY26275	Canola	cytosol	80.28	79.91
AT1G30280.1	Thale cress	cytosol	83.99	79.56
CDY54130	Canola	cytosol	48.49	74.91
CDY21468	Canola	cytosol	58.0	73.1
VIT_10s0003g04050.t01	Wine grape	nucleus	45.24	40.12
KRH37791	Soybean	nucleus	43.39	39.96
KRH12827	Soybean	nucleus	42.92	39.7
KRH58698	Soybean	nucleus	40.84	37.85
KRH44795	Soybean	nucleus	38.98	37.09
KRH42596	Soybean	nucleus	39.91	36.13
CDX88363	Canola	cytosol	12.99	23.43
CDX87523	Canola	cytosol	12.99	18.3
CDY04660	Canola	cytosol	15.31	13.78
CDY45410	Canola	nucleus	17.87	12.96
CDY00396	Canola	nucleus	15.55	12.79
CDY08188	Canola	nucleus	14.39	12.73
CDX73142	Canola	nucleus	17.4	12.67
CDY01318	Canola	cytosol	14.85	12.45
CDX76445	Canola	nucleus	20.42	10.55
CDY31429	Canola	plastid	19.95	10.54
CDY59467	Canola	mitochondrion	17.4	7.58
CDX69230	Canola	nucleus	21.35	7.55
CDX75581	Canola	nucleus	20.65	7.41
CDX73162	Canola	nucleus	19.72	6.13
CDY45424	Canola	nucleus	19.72	5.92

Protein Annotations

EnsemblPlants:CDX98192	EnsemblPlantsGene:GSBRNA2T00105651001	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil
PANTHER:PTHR23172	PANTHER:PTHR23172:SF39	ProteinID:CDX98192	ProteinID:CDX98192.1	SEG:seg	SUPFAM:SSF46565
UniParc:UPI0004EDDD29	MapMan:22.1.6.4	:	:	:	:

Description

BnaC07g09060D

Coordinates

chrLK031903:-:617954..619833

Molecular Weight (calculated)

48080.6 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.854

Length

431 amino acids

Sequence
(BLAST)

001: MDESWRKKMG LNLDPFFSIA RKSMDARIDA EDFSDVFGGP PRSVITRKFS GDFSRSDCFY DEIFLPPGIS SGGTLPSSRS HRRNLPGFRI PSGGEGSKKQ
101: SPVAKSKSRS KSSSVLTSEE VSPPYQPAAA TPGGEAGFSS FTSRLRPLNV PSRSHKRESK KQSFPAFPTS DDSFSGHANT PEKSDFYYKK PHFGGSRRSS
201: PETMSLDPFS FRRMDDFGPS SPASSPVSSF ICESEAKQRM TGDCDIEEEE EEEEEMSSYV IEINSNRFDR YRDGGSGGGG GNSDSNDMDE AIAWAKERSQ
301: RPEAKPTEQD LIDSRRSEEE EAKSEEEMEM EIKDEEIRIW LTGKETNIRL LLSTLHHVLW SNSNWHAIPL ANLRDGSQVK KAYQKARLCL HPDKLQQRGG
401: TSPLQKSVAC RVFSILQEAW AVYVTNEGLS S

Best Arabidopsis Sequence Match ( AT1G30280.1 )
(BLAST)

001: MDESWRMKMG LSVDPFFSIA RKSMDARIDA EDFADVFGGP PRSVLTRKFS GDFSRSDCFY DEIFQPPGTF SSGGSLASSK SHGRNLPAFR IPSGGEGFYD
101: GVFGGRGGSA KEGSKKQSSM TKPRSNSSSM LSSEEASPHY PPPAAASGDD SGFSSFTSRL RPLNVPSRSH KRESKKQSFS AVPKAKDSFS GQNNTPEKAD
201: FYYKKTHFGG SRRASPETIS LDPNSFRRMD DYGPSSPASS PVSSFICEEE DDNTHAKQRT NRDCKVEEVV VEDEEDEEEE EMSSYVIEIN SDRFDRYREE
301: GGGGGGNSDS NDMDEAIAWA KERSQRPEAK QTEEDVIDSR RSEEEPKSEE EMEMEMKDEE IRIWLTGKET NIRLLLSTLH HVLWSNSNWD SIPLANLRDG
401: SQVKKAYQRA RLCLHPDKLQ QRGGTSPIQK SVASRVFAIL QEAWAVYVTN EGLSS

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C752]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.