Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08188 | Canola | nucleus | 88.1 | 86.65 |
| KRG89681 | Soybean | extracellular, golgi | 13.15 | 75.0 |
| CDY00396 | Canola | nucleus | 80.58 | 73.66 |
| CDY01318 | Canola | cytosol | 78.5 | 73.15 |
| AT1G21660.1 | Thale cress | nucleus | 76.62 | 70.17 |
| CDX88363 | Canola | cytosol | 31.52 | 63.18 |
| PGSC0003DMT400030755 | Potato | nucleus | 23.38 | 57.73 |
| CDX87523 | Canola | cytosol | 35.7 | 55.88 |
| KRH64620 | Soybean | nucleus | 44.68 | 41.39 |
| KRH53284 | Soybean | nucleus | 44.05 | 40.89 |
| VIT_18s0001g01980.t01 | Wine grape | cytosol | 41.54 | 38.57 |
| Solyc06g060090.2.1 | Tomato | nucleus | 37.37 | 36.76 |
| CDY31429 | Canola | plastid | 42.38 | 24.88 |
| CDX76445 | Canola | nucleus | 42.8 | 24.58 |
| Os01t0355500-02 | Rice | nucleus | 40.08 | 20.25 |
| OQU86832 | Sorghum | nucleus | 38.83 | 19.4 |
| CDY54130 | Canola | cytosol | 9.81 | 16.85 |
| CDX90242 | Canola | nucleus | 14.61 | 16.75 |
| CDY26275 | Canola | cytosol | 14.2 | 15.7 |
| CDX77599 | Canola | nucleus | 14.2 | 15.63 |
| CDY70725 | Canola | nucleus | 13.99 | 15.58 |
| CDX98192 | Canola | nucleus | 13.78 | 15.31 |
| Zm00001d040795_P002 | Maize | cytosol | 28.6 | 14.91 |
| CDY45410 | Canola | nucleus | 14.82 | 11.95 |
| CDX73142 | Canola | nucleus | 14.61 | 11.82 |
| CDY21468 | Canola | cytosol | 7.93 | 11.11 |
| CDX75581 | Canola | nucleus | 26.3 | 10.49 |
| CDX69230 | Canola | nucleus | 26.1 | 10.25 |
| CDX73162 | Canola | nucleus | 24.22 | 8.37 |
| CDY45424 | Canola | nucleus | 24.01 | 8.01 |
| CDY59467 | Canola | mitochondrion | 14.61 | 7.08 |
Protein Annotations
| EnsemblPlants:CDY04660 | EnsemblPlantsGene:GSBRNA2T00119260001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | PANTHER:PTHR23172 | PANTHER:PTHR23172:SF51 | PFscan:PS50076 | ProteinID:CDY04660 | ProteinID:CDY04660.1 |
| SEG:seg | SUPFAM:SSF46565 | UniParc:UPI0004EDDF69 | MapMan:22.1.6.4 | : | : |
Description
BnaC05g16980D
Coordinates
chrLK031956:+:657702..661948
Molecular Weight (calculated)
52155.5 Da
IEP (calculated)
9.475
GRAVY (calculated)
-0.691
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEFGVLTER YGIKPQGKSA PMAASKRSHS TPNPQTWKSY ASSSNKVSGN GSSYNGDDIF FTSSSSTTMN GASSGGFDVF GGMNNKNSKS AHGFHADDLF
101: GAPNSVGNDD VFGSFSSSTK QYAPVDDLLA RFGKNGFDEL IPGFGATSHA TRSKTTASNF VDADPFVVLE STMSRAHSSS GMFVDPLDAF AASVSSQGHK
201: PSYNASTKLK PPPKPTQKVN RAKSSVDELD HFAMGTMRRS ASASDAASKC REAEETKQFG VDDLDSFFSS GPRSSSVPKS RTATQAPRKP AVNVPKKTAN
301: GVSSAKKPPA PANLVDDFSA LFGEDPLFKE FEEIPGETEE RRKARWDREQ RTKSRVAQAV ADMNNRDHQS RIEQEQRTRI SETADAEIKR WATGKEGNMR
401: ALLSSLQIVL WPGCGWEAVS LTDLITSSAV KKVYRKATLY VHPDKVQQKG ATLEQKYIAE KVFDILKEAW NKFNKEELS
101: GAPNSVGNDD VFGSFSSSTK QYAPVDDLLA RFGKNGFDEL IPGFGATSHA TRSKTTASNF VDADPFVVLE STMSRAHSSS GMFVDPLDAF AASVSSQGHK
201: PSYNASTKLK PPPKPTQKVN RAKSSVDELD HFAMGTMRRS ASASDAASKC REAEETKQFG VDDLDSFFSS GPRSSSVPKS RTATQAPRKP AVNVPKKTAN
301: GVSSAKKPPA PANLVDDFSA LFGEDPLFKE FEEIPGETEE RRKARWDREQ RTKSRVAQAV ADMNNRDHQS RIEQEQRTRI SETADAEIKR WATGKEGNMR
401: ALLSSLQIVL WPGCGWEAVS LTDLITSSAV KKVYRKATLY VHPDKVQQKG ATLEQKYIAE KVFDILKEAW NKFNKEELS
001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS
Arabidopsis Description
At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.