Factsheet for AT1G21660.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04660	Canola	cytosol	70.17	76.62
CDY01318	Canola	cytosol	75.14	76.46
KRG89681	Soybean	extracellular, golgi	12.24	76.19
CDY00396	Canola	nucleus	76.1	75.95
Bra012290.1-P	Field mustard	cytosol	74.0	75.15
CDY08188	Canola	nucleus	69.02	74.13
Bra017937.1-P	Field mustard	nucleus	69.02	74.13
PGSC0003DMT400030755	Potato	nucleus	20.84	56.19
KRH64620	Soybean	nucleus	41.68	42.17
KRH53284	Soybean	nucleus	41.49	42.05
VIT_18s0001g01980.t01	Wine grape	cytosol	39.39	39.92
Solyc06g060090.2.1	Tomato	nucleus	34.99	37.58
AT4G12770.1	Thale cress	nucleus	41.87	24.58
AT4G12780.1	Thale cress	nucleus	39.96	23.12
Os01t0355500-02	Rice	nucleus	38.24	21.1
OQU86832	Sorghum	nucleus	37.48	20.44
Zm00001d040795_P002	Maize	cytosol	28.49	16.21
AT1G30280.1	Thale cress	cytosol	13.0	14.95
AT1G75100.1	Thale cress	nucleus	13.77	11.06
AT4G36520.1	Thale cress	nucleus, plastid	25.24	9.28
AT1G75310.2	Thale cress	nucleus	22.56	8.13

Protein Annotations

Gene3D:1.10.287.110	MapMan:22.1.6.4	EntrezGene:838768	UniProt:A0A178W8I1	ProteinID:AAD41419.1	ProteinID:AEE30136.1
ArrayExpress:AT1G21660	EnsemblPlantsGene:AT1G21660	RefSeq:AT1G21660	TAIR:AT1G21660	RefSeq:AT1G21660-TAIR-G	EnsemblPlants:AT1G21660.1
TAIR:AT1G21660.1	EMBL:AY099577	EMBL:BT010382	InterPro:DnaJ_domain	GO:GO:0005575	GO:GO:0006810
GO:GO:0006898	GO:GO:0008150	GO:GO:0031982	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
RefSeq:NP_173585.1	ProteinID:OAP14638.1	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PFscan:PS50076	PANTHER:PTHR23172	PANTHER:PTHR23172:SF51	UniProt:Q9XI12	SUPFAM:SSF46565	UniParc:UPI00000A8846
SEG:seg	:	:	:	:	:

Description

At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]

Coordinates

chr1:+:7605620..7609223

Molecular Weight (calculated)

56913.4 Da

IEP (calculated)

6.981

GRAVY (calculated)

-0.753

Length

523 amino acids

Sequence
(BLAST)

001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.