Factsheet for Solyc06g060090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030755	Potato	nucleus	38.4	96.39
KRG89681	Soybean	extracellular, golgi	12.12	70.24
CDX88363	Canola	cytosol	23.82	48.54
Bra015674.1-P	Field mustard	cytosol	26.28	42.11
CDX87523	Canola	cytosol	25.87	41.18
VIT_18s0001g01980.t01	Wine grape	cytosol	39.84	37.6
CDY04660	Canola	cytosol	36.76	37.37
Bra017937.1-P	Field mustard	nucleus	35.73	35.73
CDY08188	Canola	nucleus	35.32	35.32
CDY01318	Canola	cytosol	37.17	35.21
AT1G21660.1	Thale cress	nucleus	37.58	34.99
Bra012290.1-P	Field mustard	cytosol	36.96	34.95
CDY00396	Canola	nucleus	37.37	34.73
KRH64620	Soybean	nucleus	36.14	34.04
KRH53284	Soybean	nucleus	35.52	33.53
Solyc09g018960.2.1	Tomato	nucleus	41.68	22.04
Solyc06g082840.2.1	Tomato	nucleus	41.68	21.08
Os01t0355500-02	Rice	nucleus	39.22	20.15
OQU86832	Sorghum	nucleus	37.99	19.29
Zm00001d040795_P002	Maize	cytosol	27.52	14.58
Solyc04g080040.2.1	Tomato	nucleus	17.04	11.46
Solyc02g085030.2.1	Tomato	nucleus	25.87	8.97
Solyc04g080600.2.1	Tomato	nucleus	24.44	7.88

Protein Annotations

EnsemblPlants:Solyc06g060090.2.1	EnsemblPlantsGene:Solyc06g060090.2	Gene3D:1.10.287.110	GO:GO:0005575	GO:GO:0006810	GO:GO:0006898
GO:GO:0008150	GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR23172
PANTHER:PTHR23172:SF54	SEG:seg	SUPFAM:SSF46565	UniParc:UPI0002765F66	UniProt:K4C6J0	MapMan:22.1.6.4

Description

No Description!

Coordinates

chr6:+:37996224..38005268

Molecular Weight (calculated)

53907.9 Da

IEP (calculated)

6.693

GRAVY (calculated)

-0.946

Length

487 amino acids

Sequence
(BLAST)

001: MDEFGVLVER YGVKVQGGKS TPMANLKAKN NSSNGFPSNL GFNSGQNTGY SSGDPFADDL DGIFRSKTSP NYDDNDIFGG VFANSKQQQN NVDIESVLGG
101: SSSGNNNNYA SKNVNDDFDL FGTEPKRSDS IDDIFGNLGL KSDSLKKDPA VNRSEGDDLI PGFGDFSSPS YSKKSDPRSP QQSNSSKSSS SSPDDPFLVF
201: ESSTSEANAS SWPFSESSEQ HRGSNPVTSS IDELENFANF KVRSDTTERP HVPKKDSSVK SPVDRAQEKS KNVRVTINKP SNTTKPKSAA EGHMSAGFHK
301: KGMPEEKKSS LSKKNASPVK NFVDDLMFFG DSAPSSEAFQ EVEDESEERR NARLKHHLKT QERMAKALAE KTQRDLQSQN EQEEKHRLAD TLNYDIKRWA
401: TGKEGNLRAL LSSLQHVLWP ECGWQPVSLT DLITSTSVKK VYHKATLCVH PDKVQQKGAT VRQKYIAEKV FDLLKEAWNK FNTEELR

Best Arabidopsis Sequence Match ( AT1G21660.1 )
(BLAST)

001: MDEFGVLTER YGIKPQGKSA PMAASKRNPN NNGQSWNFGT GSSGLNAKST SFSSNSSWNK DSTNGSLFDG DDIFFPANST NRKVSNDFDV FAGLNKSSSS
101: GDNSKSSLND DLFFSNFGNP GKTTPSSADD LFGGVIPGSK SSDSVKNDDL FGSFSSSEKQ YAAAVDDLLG LGKNEAGYDG LIPGFGGSTQ TTSSKTTPSN
201: FDATDPFVVL ESTTSTGLFV DPLEEFAATV SSQGIKPSNT SHTSTKLKPP PKPTQKVNRG KSVGMSSIDE LEDFAMGTMR RSASASDTAS KYREAEDAAT
301: KNKQFGVDDL DSFFSARSSS VPKSRTTTET TRKQASNAPK KTPNGVSNAK KPPAPANLVD DFSALFGEDP IFRQFEEIPG ESEERRKARW DREQRTKSRV
401: AQAVADMNNR DHQSRIEQEQ RTRISETVDT EIRRWATGKE GNMRALLSSL HIVLWPGCGW EAVSITDLIT SSAVKKVYRK ATLYVHPDKV QQKGATLEQK
501: YIAEKVFDIL KEAWNKFNKE ELS

Arabidopsis Description

At1g21660 [Source:UniProtKB/TrEMBL;Acc:Q9XI12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.