Factsheet for AT4G12780.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G12770.1	Thale cress	nucleus	91.92	93.27
PGSC0003DMT400052312	Potato	cytosol	10.62	92.31
CDY31429	Canola	plastid	74.56	82.6
Bra020913.1-P	Field mustard	nucleus	74.78	80.86
CDX76445	Canola	nucleus	74.45	80.7
VIT_00s0188g00210.t01	Wine grape	plastid	10.62	59.26
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	54.65	51.57
GSMUA_Achr2P02260_001	Banana	nucleus	15.6	50.9
KRH53945	Soybean	nucleus, plastid	50.77	49.78
KRH40961	Soybean	endoplasmic reticulum	51.11	49.46
PGSC0003DMT400071173	Potato	nucleus	52.1	49.37
Solyc09g018960.2.1	Tomato	nucleus	50.0	49.08
KRH63993	Soybean	nucleus, plastid	49.45	49.01
GSMUA_Achr3P24020_001	Banana	nucleus	43.25	49.0
GSMUA_Achr11P...	Banana	nucleus	50.11	48.81
Solyc06g082840.2.1	Tomato	nucleus	51.66	48.49
HORVU5Hr1G024350.1	Barley	plasma membrane	39.38	48.24
EES17168	Sorghum	mitochondrion, nucleus	47.79	48.16
Os12t0548200-02	Rice	plasma membrane	48.89	47.78
Zm00001d041647_P004	Maize	nucleus	46.46	47.51
GSMUA_Achr1P26650_001	Banana	nucleus	45.8	47.15
KRH59609	Soybean	nucleus	51.0	46.9
TraesCS5D01G104700.2	Wheat	nucleus	45.35	46.12
TraesCS5A01G092500.2	Wheat	nucleus	45.24	45.85
TraesCS5B01G098600.2	Wheat	nucleus	45.02	45.63
PGSC0003DMT400052311	Potato	nucleus	42.59	45.62
Zm00001d023838_P014	Maize	mitochondrion, nucleus	44.47	44.52
Os11t0661200-01	Rice	nucleus	41.37	42.12
TraesCS4D01G145200.4	Wheat	nucleus	41.04	42.11
EES08933	Sorghum	nucleus, plastid	41.48	41.25
Zm00001d007692_P003	Maize	plasma membrane	39.38	40.14
AT1G21660.1	Thale cress	nucleus	23.12	39.96
HORVU4Hr1G033280.4	Barley	nucleus	40.27	39.1
TraesCS4A01G169200.1	Wheat	nucleus	40.82	39.09
TraesCS4B01G126200.1	Wheat	nucleus	39.6	38.33
AT1G30280.1	Thale cress	cytosol	10.51	20.88
AT4G36520.1	Thale cress	nucleus, plastid	25.89	16.46
AT1G75310.2	Thale cress	nucleus	23.56	14.68
AT1G75100.1	Thale cress	nucleus	10.29	14.29

Protein Annotations

Gene3D:1.10.287.110	MapMan:22.1.6.4	EntrezGene:826889	EntrezGene:826890	ProteinID:AEE83179.1	ProteinID:ANM67372.1
ArrayExpress:AT4G12780	EnsemblPlantsGene:AT4G12780	RefSeq:AT4G12780	TAIR:AT4G12780	RefSeq:AT4G12780-TAIR-G	EnsemblPlants:AT4G12780.1
TAIR:AT4G12780.1	EMBL:AY081334	Unigene:At.21973	EMBL:BT009679	ProteinID:CAB40995.1	ProteinID:CAB78320.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0005829	GO:GO:0005886
GO:GO:0006810	GO:GO:0006898	GO:GO:0008150	GO:GO:0009504	GO:GO:0016020	GO:GO:0031410
GO:GO:0031982	InterPro:IPR036869	InterPro:J_dom_sf	RefSeq:NP_001329206.1	RefSeq:NP_193014.5	PO:PO:0000293
PANTHER:PTHR23172	PANTHER:PTHR23172:SF54	UniProt:Q9SU08	SUPFAM:SSF46565	UniParc:UPI0001A7B222	SEG:seg

Description

AUXI1Auxilin-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU08]

Coordinates

chr4:+:7512007..7517067

Molecular Weight (calculated)

99857.7 Da

IEP (calculated)

6.551

GRAVY (calculated)

-1.019

Length

904 amino acids

Sequence
(BLAST)

001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFATAAGKK SDSLPVFDDP GRDGDDLLFK DVFSGPPPPK YGSSSGDSRS PSAPAFDYDA
101: MFKEPKSKSA SSMPVYDKPV YDDEDVFESI PELKIPSTSS QSARFENVFS SISSSPTKHR KQNSSPFDDL MGNNLGKKGA DSDREEKGSS IFDDLIPGFG
201: RTSSPPSKRT TSETTNQSEK APYRTAETSS NVEEDPFVVL EESESTPREP SRTDPLDDIG KFNSRKTDHS SVHGGVFVDI DPLDNLGKPG PDMNSKGKSH
301: LRPPGNISGS QSPPVESPGS YHSKKVSFED FLEPHNMSTP PPTNSNGSFE SSDDVWLTVS EIPLFTQPTS APPPTRPPPP RPTRPIKKKV NEPSIPTSAY
401: HSHVPSSGRA SVNSPTASQM DELDDFSIGR NQTAANGYPD PSSGEDSDVF STAAASAAAM KDAMDKAEAK FRHAKERREK ENLKASRSRE GDHTENYDSR
501: ERELREKQVR LDRERAEREA EMEKAQEREK EEREREQKRI ERERERLVAR QAVERATREA RERAATEAHA KVQRAAVGKA TDARERAERA AVQRAHAEAR
601: ERAAAGARDK AAKAAAEARE KAEKAAAEAK ERANAEAREK ETRVRAERAA VERAAAEARG RAAAQAKAKQ QQENTNDLDS FFSSISRPNS APRQRTNPLD
701: PFQDSWNKGG SFESSRESLR VPPGQPENLR KTSSVTNIVD DLSSIFGASA SQSGGFQDVD GETEERRRAR LERHQRTQER AAKALAEKNE RDLQVQREQV
801: EKDRIGVTLD VEIKRWGAGK EGNLRALLST LQYVLWPECG WQPVSLTDLI TAASVKKVYR KATLCIHPDK VQQKGANLQQ KYIAEKVFDM LKEAWNKFNS
901: EELF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.