Factsheet for Bra020913.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31429	Canola	plastid	96.17	98.53
CDX76445	Canola	nucleus	97.73	97.96
PGSC0003DMT400052312	Potato	cytosol	11.36	91.35
AT4G12770.1	Thale cress	nucleus	82.06	76.99
AT4G12780.1	Thale cress	nucleus	80.86	74.78
VIT_00s0188g00210.t01	Wine grape	plastid	11.72	60.49
GSMUA_Achr2P02260_001	Banana	nucleus	16.63	50.18
VIT_07s0031g02350.t01	Wine grape	nucleus, plastid	55.98	48.85
KRH53945	Soybean	nucleus, plastid	53.59	48.59
HORVU5Hr1G024350.1	Barley	plasma membrane	42.82	48.51
KRH40961	Soybean	endoplasmic reticulum	54.07	48.39
KRH63993	Soybean	nucleus, plastid	51.32	47.04
GSMUA_Achr11P...	Banana	nucleus	51.91	46.77
PGSC0003DMT400071173	Potato	nucleus	53.11	46.54
Bra015674.1-P	Field mustard	cytosol	16.75	46.05
KRH59609	Soybean	nucleus	54.07	45.98
Solyc09g018960.2.1	Tomato	nucleus	50.6	45.93
Solyc06g082840.2.1	Tomato	nucleus	52.87	45.9
GSMUA_Achr3P24020_001	Banana	nucleus	43.78	45.86
Os12t0548200-02	Rice	plasma membrane	50.0	45.19
Zm00001d041647_P004	Maize	nucleus	47.49	44.91
GSMUA_Achr1P26650_001	Banana	nucleus	47.13	44.87
EES17168	Sorghum	mitochondrion, nucleus	48.09	44.82
TraesCS5D01G104700.2	Wheat	nucleus	47.13	44.32
TraesCS5A01G092500.2	Wheat	nucleus	47.25	44.28
TraesCS5B01G098600.2	Wheat	nucleus	46.89	43.95
PGSC0003DMT400052311	Potato	nucleus	43.06	42.65
Zm00001d023838_P014	Maize	mitochondrion, nucleus	45.69	42.3
TraesCS4D01G145200.4	Wheat	nucleus	42.82	40.64
Bra017937.1-P	Field mustard	nucleus	23.56	40.45
Os11t0661200-01	Rice	nucleus	42.7	40.2
EES08933	Sorghum	nucleus, plastid	43.66	40.15
Zm00001d007692_P003	Maize	plasma membrane	42.34	39.91
Bra012290.1-P	Field mustard	cytosol	24.16	39.22
HORVU4Hr1G033280.4	Barley	nucleus	42.11	37.81
TraesCS4A01G169200.1	Wheat	nucleus	42.46	37.61
TraesCS4B01G126200.1	Wheat	nucleus	41.51	37.15
Bra032375.1-P	Field mustard	cytosol	10.77	20.79
Bra014876.1-P	Field mustard	nucleus	10.77	20.74
Bra010780.1-P	Field mustard	nucleus	10.29	20.57
Bra011688.1-P	Field mustard	nucleus	26.44	17.65
Bra015866.1-P	Field mustard	nucleus	11.12	14.58
Bra015852.1-P	Field mustard	nucleus	24.64	13.87

Protein Annotations

EnsemblPlants:Bra020913.1	EnsemblPlants:Bra020913.1-P	EnsemblPlantsGene:Bra020913	Gene3D:1.10.287.110	InterPro:IPR036869	InterPro:J_dom_sf
ncoils:Coil	PANTHER:PTHR23172	PANTHER:PTHR23172:SF54	SEG:seg	SUPFAM:SSF46565	UniParc:UPI0002545A1D
UniProt:M4DWL9	MapMan:22.1.6.4	:	:	:	:

Description

AT4G12770 (E=2e-236) | heat shock protein binding

Coordinates

chrA08:+:11249185..11252534

Molecular Weight (calculated)

92401.1 Da

IEP (calculated)

6.705

GRAVY (calculated)

-1.028

Length

836 amino acids

Sequence
(BLAST)

001: MDDFSGLLGL KPQGKSAPMA PSSSSPARNK SDSSPLFDDI SGGDDLLFSD SRSQTKPSDF DYDAMFKDPK PVYDKPVYDE EDVFESLKTP PGGSQSARFD
101: DLFSSHSVHR KNNSSPFDDL IGNLSKPESE KRDERGSSAF DDLIPGFGRA SSPPAKRPTS ETSHSQKPPY RTSSNLAEDP FVVLESASTP REPPPSGGYS
201: DPLDDIGLFN SRKTDHSFAD IDPLDSLGKS GPDVSSRDKS HLRPGNGSGS QSPVESSHTG SYHGKKVSFD EVLEPQNTSV PHATAPPYEN KSLNSDGSFD
301: LSDDVWLTVS EIPLFTLPTS APPPSRPPPP RPTRPMKKKA NEPHSHVRTS ARASVNSPTA ASQMDDLDDF SMGKNHTAAN GEDSDGYSTA VASAAAMKDA
401: MDKAEAKFRQ AKERREKDNL KASRSMEGDP VDSYDSRERE LREKQVRLDR ERAEREAEME KAQEREREER ERKRVEKERE RLLARQAVER ATREARERAA
501: SEAHAKAQRA AVGKANTDAR ERAERAAVQR AHAEARERAA AGAREKAERA AAEARERELS VAREKEAKVK AERAAVERAA AEARARATAE ARARVAAQAK
601: AKQQENNNDL DSFFDSVSRP SSAPRQRTNP LDPFQDTWNK GGSFESSRAS SRVPSGAAEN LRKTSSATNI VDDLSSIFGA SATQSGGFQD VEGETEERRR
701: ARLERHQRTQ ERAAQALAEK NDRDLRAQRE QAEKNRIGET LDVEIKRWGA GKEGNLRALL STLQYVLWPE CGWQPVSLTD LITAASVKKF YRKATLCIHP
801: DKVQQKGANL QQKYIAEKVF DMLKEAWNKF NSEELF

Best Arabidopsis Sequence Match ( AT4G12770.1 )
(BLAST)

001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F

Arabidopsis Description

Auxilin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQ57]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.