Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G145200.4 | Wheat | nucleus | 90.36 | 95.8 |
| TraesCS4A01G169200.1 | Wheat | nucleus | 95.4 | 94.39 |
| HORVU4Hr1G033280.4 | Barley | nucleus | 90.15 | 90.44 |
| PGSC0003DMT400052312 | Potato | cytosol | 8.99 | 80.77 |
| VIT_00s0188g00150.t01 | Wine grape | cytosol | 3.96 | 80.43 |
| VIT_10s0116g01370.t01 | Wine grape | extracellular | 6.32 | 70.24 |
| Os11t0661200-01 | Rice | nucleus | 65.74 | 69.14 |
| EES08933 | Sorghum | nucleus, plastid | 66.38 | 68.21 |
| Zm00001d007692_P003 | Maize | plasma membrane | 62.42 | 65.73 |
| VIT_00s0188g00210.t01 | Wine grape | plastid | 9.53 | 54.94 |
| TraesCS5B01G098600.2 | Wheat | nucleus | 47.97 | 50.22 |
| GSMUA_Achr11P... | Banana | nucleus | 43.79 | 44.07 |
| CDY31429 | Canola | plastid | 36.94 | 42.28 |
| CDX76445 | Canola | nucleus | 37.26 | 41.73 |
| Bra020913.1-P | Field mustard | nucleus | 37.15 | 41.51 |
| KRH63993 | Soybean | nucleus, plastid | 40.47 | 41.45 |
| KRH53945 | Soybean | nucleus, plastid | 40.9 | 41.43 |
| KRH40961 | Soybean | endoplasmic reticulum | 41.33 | 41.33 |
| VIT_07s0031g02350.t01 | Wine grape | nucleus, plastid | 41.76 | 40.71 |
| AT4G12770.1 | Thale cress | nucleus | 38.76 | 40.63 |
| GSMUA_Achr3P24020_001 | Banana | nucleus | 33.94 | 39.72 |
| AT4G12780.1 | Thale cress | nucleus | 38.33 | 39.6 |
| Solyc09g018960.2.1 | Tomato | nucleus | 38.97 | 39.52 |
| KRH59609 | Soybean | nucleus | 41.43 | 39.37 |
| PGSC0003DMT400071173 | Potato | nucleus | 38.97 | 38.16 |
| Solyc06g082840.2.1 | Tomato | nucleus | 38.33 | 37.18 |
| PGSC0003DMT400052311 | Potato | nucleus | 31.48 | 34.83 |
| TraesCS4B01G261900.1 | Wheat | nucleus, plastid | 10.49 | 15.36 |
| TraesCS1B01G449600.1 | Wheat | nucleus | 23.13 | 13.96 |
| TraesCS3B01G258000.2 | Wheat | nucleus | 20.88 | 13.11 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G126200.1 | EnsemblPlantsGene:TraesCS4B01G126200 | Gene3D:1.10.287.110 | InterPro:IPR036869 | InterPro:J_dom_sf | ncoils:Coil |
| PANTHER:PTHR23172 | PANTHER:PTHR23172:SF50 | SEG:seg | SUPFAM:SSF46565 | MapMan:22.1.6.4 | : |
Description
No Description!
Coordinates
chr4B:+:159600453..159605240
Molecular Weight (calculated)
102745.0 Da
IEP (calculated)
6.446
GRAVY (calculated)
-0.936
Length
934 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTSGGRHPP YTDRTCQRTC QQRERKIHHH LPPLSHHFLS PDLSPILSPA LRRGRRRRRS RAMDGIEGLL ARDFGVRPQG KAAPMAAARG GGSAWPNPRS
101: IPAPSYDGLF GAPVPAASAS GPPLDSIFDS FKGPSSSSAA AAGTKPLFDD DFFEPVRGTR ASNSTYDSDG VFGTGAAAAP AYDVFTSSNR SAPPSYDDFL
201: GGFGGKPQAE EIKRSVVVED DDLLGGFGMK LAREKKSVVE EDQQGNGFDD LIPGFASSSP PKSRNTNDDN KKKPAVPASK STASFVDDPF VVLERVSVPG
301: SAYPSPGRFT DPLEDLDKSA NTEGKNVDSA AAADSLFEDS SAFDQAPKSD PLFTSEINGD TKDSHLQSKA RESSSVQSSV KRNPASRSSL EDFGNDMPKS
401: QSARYSDIHV DDSSERYSGN GMDNQSPIST ESEDDIWLTV SEIPLFTRPT SAPAPSRSPP LLKQNPLGAK ANVEDDEYVS QSSQKHNQYK DTPEQADDSS
501: VDESEGVAMG KHQMPAYYDK NAFDDDEEFD SSSSAREERE SQERLEHVRE MRLREEQRRL EKERVLEQQR EKQAVERATK EARERAAAEA HAKAERDARQ
601: RSQRAAVQRA HQEARERAAA EAKDRVARAA AEERERAAAE ARERERTAAR ERAAADRAAA ERVQQEARKR AERAAVERAA AEARQRQAAA AAAAAKEKQS
701: TPNDVESFFR MDARDTSAAK QRAPTPTADS MFDSQPQGRG TVNGSQRTAS TSASTRKANP PSATNIFGNG LSDLFEFEST RSSSDAFQDV EGESEERRRA
801: RLERHQRTRE RAAKALAEKN ERDMQVQREQ AERDRIGDSL DFEIKRWAAG KEGNLRALLS TLQYILWPEC GWQAVSLTDL ITGAAVKKQY RKATLCIHPD
901: KVQQKGATLQ QKYIAEKVFD MLKGYHNYFV SLSF
101: IPAPSYDGLF GAPVPAASAS GPPLDSIFDS FKGPSSSSAA AAGTKPLFDD DFFEPVRGTR ASNSTYDSDG VFGTGAAAAP AYDVFTSSNR SAPPSYDDFL
201: GGFGGKPQAE EIKRSVVVED DDLLGGFGMK LAREKKSVVE EDQQGNGFDD LIPGFASSSP PKSRNTNDDN KKKPAVPASK STASFVDDPF VVLERVSVPG
301: SAYPSPGRFT DPLEDLDKSA NTEGKNVDSA AAADSLFEDS SAFDQAPKSD PLFTSEINGD TKDSHLQSKA RESSSVQSSV KRNPASRSSL EDFGNDMPKS
401: QSARYSDIHV DDSSERYSGN GMDNQSPIST ESEDDIWLTV SEIPLFTRPT SAPAPSRSPP LLKQNPLGAK ANVEDDEYVS QSSQKHNQYK DTPEQADDSS
501: VDESEGVAMG KHQMPAYYDK NAFDDDEEFD SSSSAREERE SQERLEHVRE MRLREEQRRL EKERVLEQQR EKQAVERATK EARERAAAEA HAKAERDARQ
601: RSQRAAVQRA HQEARERAAA EAKDRVARAA AEERERAAAE ARERERTAAR ERAAADRAAA ERVQQEARKR AERAAVERAA AEARQRQAAA AAAAAKEKQS
701: TPNDVESFFR MDARDTSAAK QRAPTPTADS MFDSQPQGRG TVNGSQRTAS TSASTRKANP PSATNIFGNG LSDLFEFEST RSSSDAFQDV EGESEERRRA
801: RLERHQRTRE RAAKALAEKN ERDMQVQREQ AERDRIGDSL DFEIKRWAAG KEGNLRALLS TLQYILWPEC GWQAVSLTDL ITGAAVKKQY RKATLCIHPD
901: KVQQKGATLQ QKYIAEKVFD MLKGYHNYFV SLSF
001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F
Arabidopsis Description
Auxilin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQ57]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.