Factsheet for VIT_07s0031g02350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0188g00150.t01	Wine grape	cytosol	4.59	95.65
PGSC0003DMT400052312	Potato	cytosol	10.13	93.27
VIT_10s0116g01370.t01	Wine grape	extracellular	7.1	80.95
VIT_00s0188g00210.t01	Wine grape	plastid	13.57	80.25
KRH53945	Soybean	nucleus, plastid	57.31	59.54
KRH40961	Soybean	endoplasmic reticulum	57.52	58.99
KRH63993	Soybean	nucleus, plastid	55.53	58.33
Solyc09g018960.2.1	Tomato	nucleus	56.05	58.31
GSMUA_Achr2P02260_001	Banana	nucleus	16.81	58.12
CDY31429	Canola	plastid	48.33	56.74
PGSC0003DMT400071173	Potato	nucleus	56.05	56.29
Bra020913.1-P	Field mustard	nucleus	48.85	55.98
KRH59609	Soybean	nucleus	57.41	55.95
AT4G12770.1	Thale cress	nucleus	51.88	55.78
CDX76445	Canola	nucleus	48.23	55.4
Solyc06g082840.2.1	Tomato	nucleus	55.64	55.35
AT4G12780.1	Thale cress	nucleus	51.57	54.65
HORVU5Hr1G024350.1	Barley	plasma membrane	41.44	53.79
PGSC0003DMT400052311	Potato	nucleus	47.08	53.44
EES17168	Sorghum	mitochondrion, nucleus	48.75	52.06
GSMUA_Achr3P24020_001	Banana	nucleus	43.32	52.01
Zm00001d041647_P004	Maize	nucleus	47.6	51.58
GSMUA_Achr11P...	Banana	nucleus	49.9	51.51
GSMUA_Achr1P26650_001	Banana	nucleus	47.18	51.48
Os12t0548200-02	Rice	plasma membrane	48.96	50.7
TraesCS5D01G104700.2	Wheat	nucleus	46.97	50.62
TraesCS5A01G092500.2	Wheat	nucleus	46.97	50.45
TraesCS5B01G098600.2	Wheat	nucleus	46.56	50.0
Zm00001d023838_P014	Maize	mitochondrion, nucleus	46.87	49.72
VIT_18s0001g01980.t01	Wine grape	cytosol	25.68	47.67
Os11t0661200-01	Rice	nucleus	42.8	46.17
TraesCS4D01G145200.4	Wheat	nucleus	41.86	45.52
EES08933	Sorghum	nucleus, plastid	42.69	44.99
Zm00001d007692_P003	Maize	plasma membrane	40.71	43.97
TraesCS4A01G169200.1	Wheat	nucleus	41.75	42.37
HORVU4Hr1G033280.4	Barley	nucleus	41.13	42.32
TraesCS4B01G126200.1	Wheat	nucleus	40.71	41.76
VIT_10s0003g04050.t01	Wine grape	nucleus	11.9	23.46
VIT_04s0023g02070.t01	Wine grape	nucleus	31.32	20.62
VIT_18s0001g12770.t01	Wine grape	nucleus	25.57	18.13
VIT_18s0001g12100.t01	Wine grape	nucleus	13.57	16.97

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100247550	wikigene:100247550	MapMan:22.1.6.4	ProteinID:CCB47149	ProteinID:CCB47149.1
ncoils:Coil	UniProt:F6H4D8	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006629	GO:GO:0006810
GO:GO:0006898	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0031982	GO:GO:0090305	InterPro:IPR036869	InterPro:J_dom_sf	EntrezGene:LOC100247550	wikigene:LOC100247550
PANTHER:PTHR23172	PANTHER:PTHR23172:SF54	SUPFAM:SSF46565	TIGR:TC62669	TIGR:TC67904	UniParc:UPI0002109A8F
ArrayExpress:VIT_07s0031g02350	EnsemblPlantsGene:VIT_07s0031g02350	EnsemblPlants:VIT_07s0031g02350.t01	unigene:Vvi.37	RefSeq:XP_002275766	RefSeq:XP_002275766.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:18473765..18500876

Molecular Weight (calculated)

105676.0 Da

IEP (calculated)

6.092

GRAVY (calculated)

-0.988

Length

958 amino acids

Sequence
(BLAST)

001: MIQSQKLNEI TSPLSLLAPD FGYKSQSKSA PMSSSKPSSR GPTRSPWNAA PDDSDSLFSS SSDGRAAPSS SINFDSIFGG SSGSGAKATS SPVYDKPVYD
101: DDIFDGVPGL KTSGSVNYDA FSTVSGSKQK QNDAFDDLLG GFGRKDPEPK RSGNVEDVGS GFDDLLHGFG RISPPSNRPT TDINWAPKST VNATETTSNV
201: IEDPFVVLES TSTPAVSSSV LFSDPLEEIS KLSNSGSTRV DGSSAVGGGA FNDLDPLDGL GKSAFPSEMN KRGKNRSPSS TEPTSETQTF ATKEPIEKSS
301: VEGQDSHSQK KMPAENYWES HQTLFDIPTV STDSHKSFSQ TPSPPSHVNA SPNETNSQGE MSPRSEENLS SSDDVWLAVS DIPLFTQPTS APPPSRPPPT
401: RPTQVSRAET GSFGSNNARK KVNEFSSFTN SSQYSQSPKL TRGTVKSSAV SQIDELEDFA MGRTQNNVDG HAEGLYGDEF ETNSVAAASA AAMKEAMDRA
501: EAKFRHAKGV RERESAKASR SKEAGQLDRD EKAMQDAQER AIREKQERLE HERQEREREE EEREQRRLER TREIEREREE KEREQRRLEK ERERAREIER
601: EREKARQAVE RATKEARERA AAEARLKAER AAVGKVNAEA RERAERAAVH RAQAEARERA AAEAKERAEK AAAEARERAN TEAREKEARE RAAVARAEAE
701: VRLRTERAAV ERAAAEARER AAAAARVNQQ KNENDLESFF SMGSRPSSAP RPRANSSDPV FDTQFQNRRG PEVARTAASA SSTMRKASST TNIVDDLSSI
801: FGAAPSSGDF QDVEGESEDR RRARLERHQR TQERAAKALA EKNQRDLQAQ RDQAERHRIA ETLDVEIKRW SAGKEGNLRA LLSTLQYVLW PECGWQPVSL
901: TDLITAASVK KVYRKATLCI HPDKVQQKGA NLQQKYIAEK VFDLLKEAWN KFNSEELF

Best Arabidopsis Sequence Match ( AT4G12770.1 )
(BLAST)

001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F

Arabidopsis Description

Auxilin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQ57]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.