Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400052312 | Potato | cytosol | 13.28 | 94.23 |
| VIT_00s0188g00150.t01 | Wine grape | cytosol | 5.83 | 93.48 |
| VIT_10s0116g01370.t01 | Wine grape | extracellular | 8.94 | 78.57 |
| TraesCS5D01G104700.2 | Wheat | nucleus | 92.55 | 76.83 |
| TraesCS5A01G092500.2 | Wheat | nucleus | 92.68 | 76.68 |
| TraesCS5B01G098600.2 | Wheat | nucleus | 92.14 | 76.23 |
| Os12t0548200-02 | Rice | plasma membrane | 81.44 | 64.97 |
| EES17168 | Sorghum | mitochondrion, nucleus | 74.39 | 61.2 |
| Zm00001d041647_P004 | Maize | nucleus | 71.95 | 60.07 |
| VIT_00s0188g00210.t01 | Wine grape | plastid | 12.87 | 58.64 |
| Zm00001d023838_P014 | Maize | mitochondrion, nucleus | 71.14 | 58.14 |
| GSMUA_Achr11P... | Banana | nucleus | 56.23 | 44.72 |
| CDY31429 | Canola | plastid | 47.83 | 43.26 |
| Bra020913.1-P | Field mustard | nucleus | 48.51 | 42.82 |
| CDX76445 | Canola | nucleus | 48.1 | 42.57 |
| HORVU4Hr1G033280.4 | Barley | nucleus | 53.52 | 42.43 |
| KRH53945 | Soybean | nucleus, plastid | 52.3 | 41.87 |
| KRH40961 | Soybean | endoplasmic reticulum | 52.57 | 41.54 |
| VIT_07s0031g02350.t01 | Wine grape | nucleus, plastid | 53.79 | 41.44 |
| Solyc09g018960.2.1 | Tomato | nucleus | 51.22 | 41.04 |
| KRH63993 | Soybean | nucleus, plastid | 50.68 | 41.01 |
| GSMUA_Achr3P24020_001 | Banana | nucleus | 43.5 | 40.23 |
| AT4G12770.1 | Thale cress | nucleus | 48.37 | 40.07 |
| Solyc06g082840.2.1 | Tomato | nucleus | 52.17 | 39.98 |
| PGSC0003DMT400071173 | Potato | nucleus | 51.08 | 39.52 |
| KRH59609 | Soybean | nucleus | 52.57 | 39.47 |
| AT4G12780.1 | Thale cress | nucleus | 48.24 | 39.38 |
| PGSC0003DMT400052311 | Potato | nucleus | 39.7 | 34.72 |
| HORVU1Hr1G091570.1 | Barley | nucleus | 29.4 | 14.43 |
| HORVU3Hr1G056550.8 | Barley | cytosol | 29.0 | 13.45 |
| HORVU4Hr1G070720.5 | Barley | mitochondrion | 11.52 | 12.52 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G024350.1 | EnsemblPlantsGene:HORVU5Hr1G024350 | Gene3D:1.10.287.110 | InterPro:IPR036869 | InterPro:J_dom_sf | ncoils:Coil |
| PANTHER:PTHR23172 | PANTHER:PTHR23172:SF53 | SEG:seg | SUPFAM:SSF46565 | UniParc:UPI000B4882B3 | UniProt:A0A287QPH7 |
| MapMan:22.1.6.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:130601940..130612157
Molecular Weight (calculated)
82924.1 Da
IEP (calculated)
7.720
GRAVY (calculated)
-1.159
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: FDDLFAGIGR SSPVKQRQTA GAKEKKVPTS QPASMSSDPF VSFETTSTSA RQSSGIFSDP LDELSRHSKS QVKTAVDNDL FEDSSTFNQI PKSEPLFTTN
101: LSDDSKVSNG STKPQDSSPE QNFPKRNSAQ QPSVEDFENI FPQSQSARFS DVHVDSSAPG SEKYSGNGMD DRSPRSDESE DEIWLTVSEI PLFTQPTSAP
201: PPSRQPPSLA IKQKPHGSRA KRRDDDYLRH STQNYNHNKI SVNQAGGSSM DELEDFAMGK PQKSAYDNAN PFYEDEFERN SSAAASAAAM KEAMDKAEAK
301: FKHAKEVRER ERDAKLRNKE QQEQDDEARS YAQDREERER QNKLDREKEM RQREEKEREQ RRLEEEKELE QQRERGRGRQ AVERATKEAR ERAAIEARAK
401: AEREARQRNE RAAVQRALQE ARERAAVGAR DKADRAAAES KDRAAAEAKE RAAAQTRERA SAERAAVERA QDAKRRADRA AVERAAAEVR ERQAAEARER
501: QAASVAAAAA REKQSKPDDL ESFFGMGTRA NSAPKQRAPT VDPTFNAQSQ SRGAATTASA SSMRKASSTT NFADDLSAIF GGAPTSSDEF QAVEGESEER
601: RRARLERHQR TRERAAKALA EKNERDMNVQ REQAERDRIS ESLDFEIKRW AAGKEGNLRA LLSTMQYVLW PECGWQPVSL TDLITAAAVK KVYRKATLCI
701: HPDKVQQKGA NLQQKYIAEK VFDLLKEAWN KFNSEELF
101: LSDDSKVSNG STKPQDSSPE QNFPKRNSAQ QPSVEDFENI FPQSQSARFS DVHVDSSAPG SEKYSGNGMD DRSPRSDESE DEIWLTVSEI PLFTQPTSAP
201: PPSRQPPSLA IKQKPHGSRA KRRDDDYLRH STQNYNHNKI SVNQAGGSSM DELEDFAMGK PQKSAYDNAN PFYEDEFERN SSAAASAAAM KEAMDKAEAK
301: FKHAKEVRER ERDAKLRNKE QQEQDDEARS YAQDREERER QNKLDREKEM RQREEKEREQ RRLEEEKELE QQRERGRGRQ AVERATKEAR ERAAIEARAK
401: AEREARQRNE RAAVQRALQE ARERAAVGAR DKADRAAAES KDRAAAEAKE RAAAQTRERA SAERAAVERA QDAKRRADRA AVERAAAEVR ERQAAEARER
501: QAASVAAAAA REKQSKPDDL ESFFGMGTRA NSAPKQRAPT VDPTFNAQSQ SRGAATTASA SSMRKASSTT NFADDLSAIF GGAPTSSDEF QAVEGESEER
601: RRARLERHQR TRERAAKALA EKNERDMNVQ REQAERDRIS ESLDFEIKRW AAGKEGNLRA LLSTMQYVLW PECGWQPVSL TDLITAAAVK KVYRKATLCI
701: HPDKVQQKGA NLQQKYIAEK VFDLLKEAWN KFNSEELF
001: MDDFTGLLAR DFGLKPQGKS APMASQSNSS AADFNTFASS YSFASAAGKK SDSLPVFDDL GRDGDDLLFR DVFSGPPPKY GSSGDSRSPS APAFDYDVMF
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F
101: KEPKSKSASS MPVYDKPVYD DEDVFESIPE LKIPSTSSQS ARFENVFSSI SSSPTKHRKQ NSSPFDDLMG NNLGKKESDR EEKGSSIFDD LIPGFGRTSS
201: PPAKRTTSET TSQSQKPPYR TAETSSNVKE DPFVVLEEST STLREPSTGG FTDPLEEIGK FNSRKTDHSS VHGGVFVDTD PLDSLGKSGP DMNSRGKSHL
301: RPPGNISGSQ SPVESSGLYH SKNVSFDDVV EPQNTSTPPP TNSDGSFESS DDVWLTVSEI PLFTQPTSAP PPTRPPPPRP TRPIKKKVNE PSIPTSAYHS
401: HVPSSGRASV NSPTASQMDE LDDFSIGRNQ TAANGYPDPS SGEDSDVFST AAASAAAMKD AMDKAEAKFR HAKERREKES LKASRSREGD HTENYDSRER
501: ELREKQVRLD RERAEREAEM EKTQAREREE REREQKRIER ERERLLARQA VERATREARE RAATEAHAKV QRAAVGKVTD ARERAERAAV QRAHAEARER
601: AAAGAREKAE KAAAEARERA NAEVREKEAK VRAERAAVER AAAEARGRAA AQAKAKQQQE NNNDLDSFFN SVSRPSSVPR QRTNPPDPFQ DSWNKGGSFE
701: SSRPSSRVPS GPTENLRKAS SATNIVDDLS SIFGAPASQS GGFQDVDGET EERRRARLER HQRTQERAAK ALAEKNERDL QVQREQAEKD RIGGTLDVEI
801: RRWGAGKEGN LRALLSTLQY VLWPECGWQP VSLTDLITGA SVKKVYRKAT LCIHPDKVQQ KGANLQQKYI AEKVFDMLKE AWNKFNSEEL F
Arabidopsis Description
Auxilin-related protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQ57]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.