Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0198300-02 | Rice | nucleus | 35.46 | 40.36 |
| EER95331 | Sorghum | nucleus, plastid | 33.43 | 39.22 |
| Zm00001d048175_P002 | Maize | nucleus | 33.43 | 38.76 |
| TraesCS4A01G041000.2 | Wheat | nucleus, plastid | 35.6 | 38.74 |
| TraesCS4D01G261900.1 | Wheat | nucleus, plastid | 36.03 | 38.72 |
| TraesCS4B01G261900.1 | Wheat | nucleus, plastid | 35.75 | 38.71 |
| HORVU4Hr1G070720.5 | Barley | mitochondrion | 35.89 | 36.52 |
| KRH61195 | Soybean | nucleus | 27.79 | 30.33 |
| VIT_18s0001g12100.t01 | Wine grape | nucleus | 32.85 | 29.63 |
| CDX73142 | Canola | nucleus | 24.75 | 28.89 |
| CDY45410 | Canola | nucleus | 24.6 | 28.62 |
| Bra015866.1-P | Field mustard | nucleus | 25.9 | 28.06 |
| AT1G75100.1 | Thale cress | nucleus | 26.19 | 27.8 |
| KRH51877 | Soybean | nucleus | 28.8 | 27.64 |
| PGSC0003DMT400071608 | Potato | nucleus | 26.77 | 26.5 |
| Solyc04g080040.2.1 | Tomato | nucleus | 26.92 | 25.69 |
| GSMUA_Achr3P15350_001 | Banana | nucleus | 11.58 | 22.73 |
| PGSC0003DMT400071606 | Potato | nucleus | 16.35 | 20.07 |
| GSMUA_Achr2P02260_001 | Banana | nucleus | 6.51 | 16.25 |
| CDY59467 | Canola | mitochondrion | 22.0 | 15.37 |
| GSMUA_Achr3P24020_001 | Banana | nucleus | 15.34 | 13.28 |
| GSMUA_Achr1P26650_001 | Banana | nucleus | 15.63 | 12.3 |
| GSMUA_Achr11P... | Banana | nucleus | 16.21 | 12.07 |
| GSMUA_Achr7P25560_001 | Banana | nucleus | 16.06 | 8.43 |
| GSMUA_Achr1P13920_001 | Banana | nucleus | 15.2 | 7.36 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P25970_001 | EnsemblPlants:GSMUA_Achr7T25970_001 | EnsemblPlantsGene:GSMUA_Achr7G25970_001 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 |
| InterPro:IPR036869 | InterPro:J_dom_sf | PANTHER:PTHR23172 | PANTHER:PTHR23172:SF55 | SEG:seg | SUPFAM:SSF46565 |
| UniParc:UPI00029515E1 | UniProt:M0TKT3 | MapMan:20.5.7 | MapMan:22.1.6.4 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G25970_001]
Coordinates
chr7:+:27428932..27435113
Molecular Weight (calculated)
76865.4 Da
IEP (calculated)
6.482
GRAVY (calculated)
-0.797
Length
691 amino acids
Sequence
(BLAST)
(BLAST)
001: MERLGERDRV LLGYAYRDPF GNLQQPPPPP PHHRNSDVDF ADVFGGPPRR SSFYERRRSL ADSLDSQSRS RPLSSGLADE KPVFGELGSP ARRRHFGDNF
101: YEDIFPGSDS GSSTSRKLDR DPFFPSAPGS RVLSPNRPVL VGDSSLPPQL SLPKMRFMKG VDHPPFSSPA HHAPYKSEDG DPYASTFPYS PSDSQATPAP
201: DDMRNVGHAF YCQSPLATQT SRGMGRSSEA FSRGSQSERY ATSLEGYIGS NNFHFSLYKW AAKGVSLTLS SHSKKTNDVG RCSRLPEVVI QADDLPSDDD
301: DMSTSTSTGV SNNQTETHDN KVLSDAGSTI TEDVLPESHS KHLSRTFTGN SGMISDNIKE FSVAIPDTKR PELKNLHHLF KDDFEKDGHE SLAEKAGGGQ
401: RDMNDDFNAK QQVQGQNSEE HLDAVSPRIK DIPVSLEDKM HGSKVRGRVK EFIKIFNLEG SPKRKGTFES GDRKSKEKDR VKNKLEVQAS VSAAKTDEEM
501: KPAPTTEEGG FIIDSSEVNE TSKKGEIPDF YPSSNVPLSG DPSSERKNTL EPSSVLDLIH HCTIGSITYM LVEQLCQEHM ENKQTLSHQD QIKIADAKIR
601: EWSKGKEGNI RSLLSTLQYV LWKECGWKPV PLVDIIEGTS VKRAYQKALL CLHPDKLQQR GVAEHQKYIA EKVFDILQEA WDQFNSATNV F
101: YEDIFPGSDS GSSTSRKLDR DPFFPSAPGS RVLSPNRPVL VGDSSLPPQL SLPKMRFMKG VDHPPFSSPA HHAPYKSEDG DPYASTFPYS PSDSQATPAP
201: DDMRNVGHAF YCQSPLATQT SRGMGRSSEA FSRGSQSERY ATSLEGYIGS NNFHFSLYKW AAKGVSLTLS SHSKKTNDVG RCSRLPEVVI QADDLPSDDD
301: DMSTSTSTGV SNNQTETHDN KVLSDAGSTI TEDVLPESHS KHLSRTFTGN SGMISDNIKE FSVAIPDTKR PELKNLHHLF KDDFEKDGHE SLAEKAGGGQ
401: RDMNDDFNAK QQVQGQNSEE HLDAVSPRIK DIPVSLEDKM HGSKVRGRVK EFIKIFNLEG SPKRKGTFES GDRKSKEKDR VKNKLEVQAS VSAAKTDEEM
501: KPAPTTEEGG FIIDSSEVNE TSKKGEIPDF YPSSNVPLSG DPSSERKNTL EPSSVLDLIH HCTIGSITYM LVEQLCQEHM ENKQTLSHQD QIKIADAKIR
601: EWSKGKEGNI RSLLSTLQYV LWKECGWKPV PLVDIIEGTS VKRAYQKALL CLHPDKLQQR GVAEHQKYIA EKVFDILQEA WDQFNSATNV F
001: MQTLPSSETV LLGSNSAPPV LRSPGGDDVD IDFGDVFGGP PKRRSKVTSN EVTRHSFSES ALRRRDVIVD VGDLLPQDEK PVFGEDTSSV RRRFTTDDFF
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
101: DDIFRVNESS SLPGSRILSP AHKPESSSGT SSPSQFSLPA KATEIPTFNL AATRSLNKNK ETVSSSPLSR TSSKADVVST AKSYSDDCDD PPQVFVTGKG
201: RQFHFSIYKW PNKGVPVVIW GSSRLSSMSK AEETTPVPLS DYRKTSVVEK LGKNEEGDGK SGLSGLKDVK KTSLKRPGVQ TKEEKTETDL KSEQAFFGVS
301: KAREANVKPL DSVESEQAFS GVSKAHEATT VKPLHSIFHE EDERQDEKIV SEREVRKGKS KAKNTRSFTE DSRTKKKSQG TKSSLDSSPI PDKSSFASSS
401: AAPEVGKDGV KGKVSDFVKI FSKGASVGAG GESLGQSSRW RAKETPKTDI IHDGSNAKET VNIPDQQKKS TPDIPAMNRD QKPSQSTQKK DSDRESMNYK
501: APGDTVQEER QEPSTTHTTS EDIDEPFHVN FDVEDITQDE NKMEEANKDA EEIKNIDAKI RKWSSGKSGN IRSLLSTLQY ILWSGSGWKP VPLMDMIEGN
601: AVRKSYQRAL LILHPDKLQQ KGASANQKYM AEKVFELLQE AWDHFNTLGP V
Arabidopsis Description
JAC1JAC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WHU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.