Factsheet for TraesCS6D01G096900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	endoplasmic reticulum, mitochondrion, peroxisome
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13320.1	TraesCS1A01G308700.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS1A01G308800.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS1B01G319300.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS1D01G308000.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS2B01G113800.2	AT2G41090.1	17360592
AT3G13320.1	TraesCS3A01G184500.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS3A01G191900.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS3A01G335000.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS3B01G219900.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS3B01G365900.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS3D01G188600.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS3D01G194500.2	AT2G41090.1	17360592
AT3G13320.1	TraesCS3D01G328300.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS4B01G131100.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS4D01G126100.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5A01G057100.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5A01G057200.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5A01G139700.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5B01G059900.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5B01G137100.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5D01G068000.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5D01G068100.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS5D01G153400.1	AT2G41090.1	17360592
AT3G13320.1	TraesCS1A01G308700.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS1A01G308800.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS1B01G319300.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS1D01G308000.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS2B01G113800.2	AT2G41100.1	17360592
AT3G13320.1	TraesCS3A01G184500.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS3A01G191900.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS3A01G335000.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS3B01G219900.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS3B01G365900.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS3D01G188600.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS3D01G194500.2	AT2G41100.1	17360592
AT3G13320.1	TraesCS3D01G328300.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS4B01G131100.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS4D01G126100.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5A01G057100.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5A01G057200.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5A01G139700.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5B01G059900.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5B01G137100.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5D01G068000.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5D01G068100.1	AT2G41100.1	17360592
AT3G13320.1	TraesCS5D01G153400.1	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G137200.1	Wheat	mitochondrion	98.47	98.47
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	96.51	90.57
EES06255	Sorghum	golgi, peroxisome, plasma membrane	69.43	74.13
Os02t0138900-01	Rice	golgi, plasma membrane	40.17	73.31
KRH58038	Soybean	plasma membrane	44.1	67.11
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	63.76	64.6
Solyc12g011070.1.1	Tomato	plasma membrane	47.38	63.45
KRH46490	Soybean	golgi, peroxisome, plasma membrane	57.86	61.92
CDY23589	Canola	golgi, peroxisome, plasma membrane	56.99	61.41
PGSC0003DMT400079826	Potato	cytosol, peroxisome, plasma membrane	58.52	61.33
TraesCS2D01G507000.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	55.68	60.86
Bra030840.1-P	Field mustard	plasma membrane	54.59	60.83
CDY24195	Canola	golgi, peroxisome, plasma membrane	58.08	60.59
CDY42379	Canola	plasma membrane	54.37	60.58
CDY10539	Canola	plasma membrane	54.15	60.34
AT1G55730.2	Thale cress	plasma membrane	58.08	60.32
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	58.73	60.31
Solyc07g056110.2.1	Tomato	cytosol, peroxisome, plasma membrane	59.17	59.96
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	57.64	59.86
CDY44007	Canola	cytosol, peroxisome, plasma membrane	57.42	59.77
CDY43356	Canola	golgi, peroxisome, plasma membrane	57.64	59.73
Bra034690.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.42	59.64
TraesCS4D01G156900.2	Wheat	cytosol, peroxisome, plasma membrane	55.46	58.66
KRG98412	Soybean	plasma membrane	57.64	58.28
CDX75703	Canola	peroxisome	57.86	57.61
CDY26090	Canola	plasma membrane	55.02	57.14
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	56.77	56.64
Bra039385.1-P	Field mustard	plasma membrane	57.42	55.72
AT1G55720.1	Thale cress	plasma membrane	55.68	54.6
PGSC0003DMT400020114	Potato	cytosol, peroxisome, plasma membrane	53.28	53.63
Bra001499.1-P	Field mustard	mitochondrion	57.86	53.32
CDX82545	Canola	mitochondrion	57.86	53.0
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	49.56	47.0
KRH47395	Soybean	mitochondrion	21.4	44.34
TraesCS2D01G443700.2	Wheat	plasma membrane	41.27	42.76
TraesCS3D01G206400.1	Wheat	plastid	41.92	41.56
KRH46489	Soybean	cytosol, peroxisome, plasma membrane	52.4	33.43
VIT_12s0057g01500.t01	Wine grape	cytosol, endoplasmic reticulum, plasma membrane	59.83	24.84

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	InterPro:CAX	InterPro:CaH_exchang	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0006816	GO:GO:0008150
GO:GO:0008324	GO:GO:0015369	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:NaCa_Exmemb
PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS6D01G096900	EnsemblPlants:TraesCS6D01G096900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:60542519..60545436

Molecular Weight (calculated)

49056.5 Da

IEP (calculated)

5.604

GRAVY (calculated)

0.352

Length

458 amino acids

Sequence
(BLAST)

001: MTSTAAAGSD SRRLLPGRQN FHQMDRINGN GQKSAIQAST FSDGADEFDD DTLIASEALS RRTGGFERNA GPGNLGMFGS LKFVLLKSKL NLLIPSGFVA
101: IVVKDMTGNN GWVFPLTLLG IIPLAERLGF ATEQLAFFTG PTVGGLLNAT FGNATELIIS IHALRSGKLR VVQQSLLGSI LSNLLLVLGC AFFSGGVTCG
201: KTEQKFSKSE AVVSSGLLLM AVLGLLPPTV LHYTHSEVHS GKSGLALSRF SSCVMLVAYA CYIYFELTTS RRREESNQGR GENVGDADNN EAPDISKWEA
301: IAWLAILTIW ISVLSDYLVN AIDGASQAWN IPVAFISVIL LPIVGNAAEH ASAVMFAMKD KLDLSLGVAI GSSTQMSMFG IPFCVVIGWM MGQPMDLNFH
401: LFETASLLMT VLVVAFLLQD GTSNCLKGLM LFLCYLIVAA SFYVHSDQDP DGNNPAQN

Best Arabidopsis Sequence Match ( AT1G55720.1 )
(BLAST)

001: MYMELYLMFS NFFKSIRWCK VPAFMQAKVE MGLVNEVELK SLLEQETDSP QTNAASLMEQ GSLRERRAKA PRNSVVQSFK IVILSNKLNL LLPFGPLAIL
101: VHYLTDNKGW FFLLSLVGIT PLAERLGYAT EQLSCYTGAT VGGLLNATFG NVIELIISII ALKNGMIRVV QLTLLGSILS NILLVLGCAF FCGGLVFPGK
201: DQVFDKRNAV VSSGMLLMAV MGLLFPTFLH YTHSEVHAGS SELALSRFIS CIMLVAYAAY LFFQLKSQPS FYTEKTNQNE ETSNDDEDPE ISKWEAIIWL
301: SIFTAWVSLL SGYLVDAIEG TSVSWKIPIS FISVILLPIV GNAAEHAGAI MFAMKDKLDL SLGVAIGSSI QISMFAVPFC VVIGWMMGAQ MDLNLQLFET
401: ATLLITVIVV AFFLQLEGTS NYFKRLMLIL CYLIVAASFF VHEDPHQGTD HQQICTCRTP SYTYEIL

Arabidopsis Description

ATCAX6cation exchanger 6 [Source:TAIR;Acc:AT1G55720]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.