Factsheet for AT1G55720.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 6
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G55730.2	Thale cress	plasma membrane	82.66	87.53
Bra030840.1-P	Field mustard	plasma membrane	74.09	84.18
CDY42379	Canola	plasma membrane	74.09	84.18
CDY10539	Canola	plasma membrane	73.23	83.21
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	76.87	81.41
KRH58038	Soybean	plasma membrane	45.4	70.43
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	63.81	66.82
Os02t0138900-01	Rice	golgi, plasma membrane	35.55	66.14
KRH46490	Soybean	golgi, peroxisome, plasma membrane	60.39	65.89
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	60.6	62.61
KRG98412	Soybean	plasma membrane	59.96	61.81
EES06255	Sorghum	golgi, peroxisome, plasma membrane	54.39	59.21
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	56.53	57.52
TraesCS6D01G096900.1	Wheat	mitochondrion	54.6	55.68
TraesCS6B01G137200.1	Wheat	mitochondrion	53.96	55.02
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	54.39	52.05
KRH47395	Soybean	mitochondrion	21.63	45.7
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	41.76	40.37
AT5G01490.1	Thale cress	plastid	36.4	37.44
AT2G38170.3	Thale cress	plasma membrane, plastid	37.9	37.26
AT3G51860.2	Thale cress	plastid	37.26	37.18
KRH46489	Soybean	cytosol, peroxisome, plasma membrane	56.32	36.63

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	EntrezGene:842021	ProteinID:AAF79505.1	ProteinID:AEE33289.1
ProteinID:ANM58202.1	ArrayExpress:AT1G55720	EnsemblPlantsGene:AT1G55720	RefSeq:AT1G55720	TAIR:AT1G55720	RefSeq:AT1G55720-TAIR-G
EnsemblPlants:AT1G55720.1	TAIR:AT1G55720.1	Symbol:ATCAX6	Unigene:At.52219	InterPro:CAX	InterPro:CaH_exchang
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006811	GO:GO:0006812	GO:GO:0006816
GO:GO:0008150	GO:GO:0008324	GO:GO:0009705	GO:GO:0015297	GO:GO:0015369	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0070588	GO:GO:0098655	RefSeq:NP_001320656.1	RefSeq:NP_175968.4
InterPro:NaCa_Exmemb	PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34	TIGRFAMs:TIGR00378	TIGRFAMs:TIGR00846
TMHMM:TMhelix	UniParc:UPI0001A7B1DB	:	:	:	:

Description

ATCAX6cation exchanger 6 [Source:TAIR;Acc:AT1G55720]

Coordinates

chr1:-:20828118..20830640

Molecular Weight (calculated)

51840.9 Da

IEP (calculated)

5.402

GRAVY (calculated)

0.530

Length

467 amino acids

Sequence
(BLAST)

001: MYMELYLMFS NFFKSIRWCK VPAFMQAKVE MGLVNEVELK SLLEQETDSP QTNAASLMEQ GSLRERRAKA PRNSVVQSFK IVILSNKLNL LLPFGPLAIL
101: VHYLTDNKGW FFLLSLVGIT PLAERLGYAT EQLSCYTGAT VGGLLNATFG NVIELIISII ALKNGMIRVV QLTLLGSILS NILLVLGCAF FCGGLVFPGK
201: DQVFDKRNAV VSSGMLLMAV MGLLFPTFLH YTHSEVHAGS SELALSRFIS CIMLVAYAAY LFFQLKSQPS FYTEKTNQNE ETSNDDEDPE ISKWEAIIWL
301: SIFTAWVSLL SGYLVDAIEG TSVSWKIPIS FISVILLPIV GNAAEHAGAI MFAMKDKLDL SLGVAIGSSI QISMFAVPFC VVIGWMMGAQ MDLNLQLFET
401: ATLLITVIVV AFFLQLEGTS NYFKRLMLIL CYLIVAASFF VHEDPHQGTD HQQICTCRTP SYTYEIL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.