CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13320.1	KRG89812	AT2G41090.1	17360592
AT3G13320.1	KRG94975	AT2G41090.1	17360592
AT3G13320.1	KRH18664	AT2G41090.1	17360592
AT3G13320.1	KRG89812	AT2G41100.1	17360592
AT3G13320.1	KRG94975	AT2G41100.1	17360592
AT3G13320.1	KRH18664	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46490	Soybean	golgi, peroxisome, plasma membrane	92.69	65.19
Os02t0138900-01	Rice	golgi, plasma membrane	51.83	62.15
KRG98412	Soybean	plasma membrane	90.7	60.26
CDY23589	Canola	golgi, peroxisome, plasma membrane	74.75	52.94
KRH30353	Soybean	golgi, plasma membrane, vacuole	31.89	52.75
VIT_19s0015g01320.t01	Wine grape	cytosol, peroxisome, vacuole	77.41	52.24
CDY44007	Canola	cytosol, peroxisome, plasma membrane	74.75	51.14
CDY24195	Canola	golgi, peroxisome, plasma membrane	74.42	51.03
AT1G55730.2	Thale cress	plasma membrane	74.75	51.02
Bra034690.1-P	Field mustard	cytosol, peroxisome, plasma membrane	74.75	51.02
GSMUA_Achr5P05070_001	Banana	cytosol, peroxisome, plasma membrane	76.41	50.88
AT3G13320.1	Thale cress	golgi, peroxisome, vacuole	74.42	50.79
CDY43356	Canola	golgi, peroxisome, plasma membrane	74.42	50.68
Bra030840.1-P	Field mustard	plasma membrane	68.77	50.37
CDY42379	Canola	plasma membrane	68.44	50.12
KRH23701	Soybean	golgi, peroxisome, plasma membrane	72.76	50.11
KRH38323	Soybean	endoplasmic reticulum, extracellular, vacuole	10.96	50.0
KRH09614	Soybean	golgi, peroxisome, plasma membrane	72.09	50.0
GSMUA_Achr3P05320_001	Banana	cytosol, peroxisome, plasma membrane	76.08	49.89
CDY10539	Canola	plasma membrane	67.77	49.63
CDX75703	Canola	peroxisome	74.42	48.7
CDY26090	Canola	plasma membrane	70.43	48.07
KRH38810	Soybean	extracellular, golgi, vacuole	38.54	47.15
Bra039385.1-P	Field mustard	plasma membrane	73.75	47.03
EES06255	Sorghum	golgi, peroxisome, plasma membrane	65.12	45.69
AT1G55720.1	Thale cress	plasma membrane	70.43	45.4
Bra001499.1-P	Field mustard	mitochondrion	74.42	45.07
CDX82545	Canola	mitochondrion	74.42	44.8
TraesCS6B01G137200.1	Wheat	mitochondrion	67.11	44.1
TraesCS6D01G096900.1	Wheat	mitochondrion	67.11	44.1
TraesCS6A01G108700.1	Wheat	endoplasmic reticulum, golgi, mitochondrion, peroxisome	67.11	41.39
Zm00001d015225_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	57.48	35.82
KRG98293	Soybean	cytosol, peroxisome, plasma membrane	51.49	35.55
KRH17032	Soybean	golgi, peroxisome, plasma membrane	50.83	34.62
KRH72673	Soybean	golgi, peroxisome, plasma membrane	50.5	33.78
KRH00226	Soybean	plastid	49.5	33.18
KRH49368	Soybean	plastid	49.17	32.96
KRH65739	Soybean	plastid	47.51	32.06
KRH46489	Soybean	cytosol, peroxisome, plasma membrane	76.08	31.89
KRH75989	Soybean	golgi, peroxisome, plasma membrane	47.51	31.36
KRH65744	Soybean	golgi, peroxisome, plasma membrane	46.84	31.26
KRH47395	Soybean	mitochondrion	18.94	25.79
KRH32678	Soybean	mitochondrion, plasma membrane	14.95	20.36

Protein Annotations

Gene3D:1.20.1420.30	Gene3D:1.20.58.1130	MapMan:24.2.9.1.1	UniProt:A0A0R0JTB9	EMBL:ACUP02003191	InterPro:CAX
EnsemblPlantsGene:GLYMA_05G102600	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006816	GO:GO:0008150	GO:GO:0009705
GO:GO:0015369	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0070588	EnsemblPlants:KRH58038
ProteinID:KRH58038	ProteinID:KRH58038.1	InterPro:NaCa_Exmemb	PFAM:PF01699	PANTHER:PTHR31503	PANTHER:PTHR31503:SF34
TIGRFAMs:TIGR00378	TMHMM:TMhelix	UniParc:UPI0006ED923D	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:27180042..27182805

Molecular Weight (calculated)

33073.4 Da

IEP (calculated)

7.147

GRAVY (calculated)

0.857

Length

301 amino acids

Sequence
(BLAST)

001: MTPARKKIVK FNATELIISI YALKSGMTCV VQLSLLGSIL SNMLLVLGCA FLCGGIVNHE KEQVFNKAAT SVNSRLLLMA VMGILFPAVL HYTHSEVHVG
101: KSELSLSRFS SCIMLVAYVA YLFFQLKSQR NLYVSVNEVG SLISNISKWE TIIWLSVMTA WISILSEYLV GAIEGASMAW EIPVAFISVI LLPLVGNATE
201: HASAIMFAMK DKLDISLGVA IGSSTQISMF VIPFCVVIGW ITGHPMDLNF QLFETAVLFL TVIVVAFMLQ EGTANYFKGL MLILCYLIVA TNFYVHVDSS
301: Q

Best Arabidopsis Sequence Match ( AT1G55720.1 )
(BLAST)

001: MYMELYLMFS NFFKSIRWCK VPAFMQAKVE MGLVNEVELK SLLEQETDSP QTNAASLMEQ GSLRERRAKA PRNSVVQSFK IVILSNKLNL LLPFGPLAIL
101: VHYLTDNKGW FFLLSLVGIT PLAERLGYAT EQLSCYTGAT VGGLLNATFG NVIELIISII ALKNGMIRVV QLTLLGSILS NILLVLGCAF FCGGLVFPGK
201: DQVFDKRNAV VSSGMLLMAV MGLLFPTFLH YTHSEVHAGS SELALSRFIS CIMLVAYAAY LFFQLKSQPS FYTEKTNQNE ETSNDDEDPE ISKWEAIIWL
301: SIFTAWVSLL SGYLVDAIEG TSVSWKIPIS FISVILLPIV GNAAEHAGAI MFAMKDKLDL SLGVAIGSSI QISMFAVPFC VVIGWMMGAQ MDLNLQLFET
401: ATLLITVIVV AFFLQLEGTS NYFKRLMLIL CYLIVAASFF VHEDPHQGTD HQQICTCRTP SYTYEIL

Arabidopsis Description

ATCAX6cation exchanger 6 [Source:TAIR;Acc:AT1G55720]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.